Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g01478 | ATGGTATTTCCCCCCATCCCATCTAATTATCTTGATCCAACCACCCATCAATGGCAACAGCAAACAACAAACCATCAATCTGGGAGTGGTACAATGATTGGAGGCAGCAGTTTTCAGCTGGCACCGTCGCCGCCATCGTCACAAGTTCGGCCTGGGTCGATGGCAGATCGAGCCCGGATGGCGAACCTGCCGGTGCCAGAGACAGCGTTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGTGCCCTTCGAAGCGTCCCGGTCGGTGGAGGCTACCGCCGGAATAATAAACGAACTAAAAGTTCCTCAAAATCTCCTGTTAACTCTCAATGCCAACCTACTACTACTGAGCTTTCAGGAGGAGAAACAATGAGATCAAATTACAATAATGCCATTTCCATACCAAATGAAGGAGCTGTGGATTCAACTCATCATCATCATCCCATTGGGATATCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACAACACACCCATCTCCGTTGCTCGCAAATTCAGCTCGGTTGCTAGGAAATGGTGGCATCAACTCATCCTTGAGCTATAGCATCGTCGGAGAGATTCAAAAGAAGATGGAAGCGACAACGACAACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGGTGAATGTGGGAAAGCCATTTTGGGGAGTCCTTGGAGGAAATGATAATCGCCATTATTGGAATGGTTTTAATCCTTCATCTTCCTCTTCTCATTCACAAGTATGA | 855 | 47.13 | MVFPPIPSNYLDPTTHQWQQQTTNHQSGSGTMIGGSSFQLAPSPPSSQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSSSKSPVNSQCQPTTTELSGGETMRSNYNNAISIPNEGAVDSTHHHHPIGISNFLGFDQIQWRPQLQLHQTTHPSPLLANSARLLGNGGINSSLSYSIVGEIQKKMEATTTTTKMEEDGQQVEVNVGKPFWGVLGGNDNRHYWNGFNPSSSSSHSQV* | 285 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 14585987 | 14588288 | + | CsaV3_4G024860.1 | Csa04g01478 | 527088 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g01478 | 284 | MobiDBLite | consensus disorder prediction | 128 | 150 | - | - | |
| Csa04g01478 | 284 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 13 | 281 | IPR045174 | GO:0003700|GO:0006355 | |
| Csa04g01478 | 284 | MobiDBLite | consensus disorder prediction | 115 | 150 | - | - | |
| Csa04g01478 | 284 | ProSitePatterns | Zinc finger Dof-type signature. | 72 | 108 | IPR003851 | GO:0003677|GO:0006355 | |
| Csa04g01478 | 284 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 13 | 281 | - | - | |
| Csa04g01478 | 284 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Csa04g01478 | 284 | ProSiteProfiles | Zinc finger Dof-type profile. | 70 | 124 | IPR003851 | GO:0003677|GO:0006355 | |
| Csa04g01478 | 284 | MobiDBLite | consensus disorder prediction | 10 | 50 | - | - | |
| Csa04g01478 | 284 | Pfam | Dof domain, zinc finger | 69 | 124 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa03g03190 | Csa04g01478 | CCT | |
| Csa03g03190 | Csa04g01478 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g01478 | Csa-Chr4:14585987 | Csa06g01656 | Csa-Chr6:14567183 | 4.38E-31 | dispersed | |
| Csa01g02399 | Csa-Chr1:21290901 | Csa04g01478 | Csa-Chr4:14585987 | 5.36E-47 | wgd | |
| Csa03g03190 | Csa-Chr3:29464183 | Csa04g01478 | Csa-Chr4:14585987 | 3.75E-53 | wgd | |
| Csa04g01478 | Csa-Chr4:14585987 | Csa05g01834 | Csa-Chr5:21688794 | 3.66E-41 | wgd | |
| Csa04g01478 | Csa-Chr4:14585987 | Csa05g00707 | Csa-Chr5:4789391 | 5.65E-49 | wgd | |
| Csa04g01478 | Csa-Chr4:14585987 | Csa06g01499 | Csa-Chr6:12669120 | 1.18E-37 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31563 | PF02701 | zf-Dof | 4.00E-31 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g01478 | - | - | csv:101207098 | 563.918 |