Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01491 ATGCCGATCTCTGGGTTTCGATCTCTTCTATGGTGGAGTAAATGGTCCAAGAAAGACTGGGCCATTGCAGTAATCTGTTTCGCTTTCATCTTTTTCGTTTTCTCCTTCTTCTCCGATTCTTGGCATGCTGAAGACAGTGGCATCAACCACACTTTCGATCTCAATCCCGCCAACGACCCCGATTTGGTTGACCTCACTTTGCTGCAAAATGCCAAAGCAAAAGGCGCTCTATGTCTTGATGGGAGTTTGCCTGGTTACCATTTTCAGAAAGGCTTCGGGTCTGGTTCTAGCAACTGGGTTCTTCACATTGAGGGTGGAGGATGGTGTGATACAGTCTCGTCCTGTTCTTTGCGTAAAATGACCCCGTTAGGTTCATCAGATTACATGGAGCGTCGTGTTCTTTTCTCTGGAATTTTAAGTAGTGATGCATCACAAAATCCTGATTTCTATAATTGGAACAAGATCAAGATACGTTACTGTGATGGAGCTTCGTTTGCAGGCCATCCTGTGGGTGAAACAAAGGTACAACAGATTCAAAATGGAAATATACTTCATTTCAGAGGCCAGCTCATCTGGGAAGCGCTTATGGATGAACTCTTATCTGTTGGCTTGTCCAAGGCAAGACAGGCTCTTCTTTCAGGGTGCTCTGCTGGGGGCTTGGCTACCCTTATTCATTGTGATGACTTCAGAGAGCTTTTACCGAAGGATGCAACTGTCAAGTGTCTAGCCGATGCTGGATTTTTCCTTGACGAGAAAGATGTTTCGGGAAATCATACAATGAGATCTTTCTATCACCATGTTTTCAACCTTCAGAGAACTGGTAAAAGTTTACCCAAGGATTGTACATCTACAGACGAGCCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACATATAAGCACCCCGTTGTTTATTGTCAACCCAGTTTATGATTTTTGGCAGATACAAAATGTCTTGGTGCCAAACGCATTGGCTCGTACTGGCTCTTGGCAGAAATGTAGGCTTAATATTCATAAATGTGATCATGCTGAGCTTGAAATTCTTCAAGGGTTCCGGGACTCTTTGCTGAAGGCACTGGATGAATTCAAGCACAACAAGGAAGGAGGACTTTTTGTAAATTCTTGCTTCATCCATTGCCAAACATGGATGTCTGAGACATGGCATTCCCCCAATTCTCCAAGGATAAATAAGAGGACTATAGCAGAGGCCGTGGGTGATTGGTACTTCAAACGGAGTTCAGTGAAGCTAATTGATTGCCCTTTTCCATGCAATCCTACCTGCATTCATATGGATTTTAGCCGAGGTTAG 1311 43.63 MPISGFRSLLWWSKWSKKDWAIAVICFAFIFFVFSFFSDSWHAEDSGINHTFDLNPANDPDLVDLTLLQNAKAKGALCLDGSLPGYHFQKGFGSGSSNWVLHIEGGGWCDTVSSCSLRKMTPLGSSDYMERRVLFSGILSSDASQNPDFYNWNKIKIRYCDGASFAGHPVGETKVQQIQNGNILHFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADAGFFLDEKDVSGNHTMRSFYHHVFNLQRTGKSLPKDCTSTDEPSKCLFPQEIIKHISTPLFIVNPVYDFWQIQNVLVPNALARTGSWQKCRLNIHKCDHAELEILQGFRDSLLKALDEFKHNKEGGLFVNSCFIHCQTWMSETWHSPNSPRINKRTIAEAVGDWYFKRSSVKLIDCPFPCNPTCIHMDFSRG* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14648224 14660436 + CsaV3_4G024990.1 Csa04g01491 527101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01491 436 Pfam Pectinacetylesterase 60 414 IPR004963 GO:0016787
Csa04g01491 436 PANTHER PECTIN ACETYLESTERASE 4 13 429 - -
Csa04g01491 436 PANTHER NOTUM-RELATED 13 429 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01720 Csa-Chr3:12880358 Csa04g01491 Csa-Chr4:14648224 1.02E-104 dispersed
Csa04g00705 Csa-Chr4:4777839 Csa04g01491 Csa-Chr4:14648224 2.79E-138 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01491 K19882 - csv:101206380 887.871