Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01492 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATCTCCCGGCGTTATGATCCTGCCGACATTATCTCCGACCCCCACGATGGGGGTTTCGGTCATTCCTTCTACTACTTACCACCCGACCCACATACTCTCTCGTCATCCAAAGATTTCTCCGACGTCTACATATCTCCGGTGACCATTTTCCGGTCGATTTCCGGCGCCTCCGTTAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTTGATCTCTATCCTTACAGCACCACGTTTGATCGGGCTGCAGCTTTTGATTGCACGAATTCCTTCGCCTCTGTGCCGTTGCAGCCGGTGCCTCGCCACTCGGTGTCGGGAAATTCCGGTGGATTTCCTTTTTCAGGTCCGATGGAGAGAGGGTTTTTATCTGGACCTTTGGCTGCGAGGAGCTTTGAATCGGGTCCGATTGATCGAGTGGTTCATTCCGGTCCAGTTGAGAAGGACGGCGGACCGGAGAAATTGCAAAGGAGCGTCTCTCAGGGCGGGGTTGGAGACAGAGAACCGAAATTGAAAAAAAGAAGAAGAAGAAGAAATCTTATTCGGATTCTGAAGAGAGCCATATCCAAAACCATCTCTCGAAACAAGCATAATGAAAATGGCGCGGCTTCTGCTGGTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGGGAGCTTGGCGCAGGAAGACGATGGCGATTACTTTCTCGGAGGTCAGAGTGTACAGTGGGCGCAGGGGAAGGCCGGTGAGGATAGAGTTCACGTGGTGATATCAGAGGATAATGGTTGGGTTTTTGTCGGAATTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTGCTTGCTAATCTCTACACTGCTGTTCTTAAAGAGCTCAAGAGTGGTTTGATTTGGAGTGATAAGTTCGATTCAACTGCAACTTCATCTTCCATGAACTCATCGAATTCTGCTTCAACTGAGGAAGACGATCATAGAACAAATCACATGAAAAATCAAGAGAGTGATCATCAATCTACAGAGAATATCTTACCCGAAAATGATGTTGTGAATTTGGAGGCTGATTTGGTGAGGAAAAGAGAGAGAGTTCACAATACGAATTACAGGACGAGTCAGCTGATGAAGAAGGCGGATCAGAATCCAAAGAACTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGGAAGTTGAACAATAACAGACAAATAGATCACCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAGGTGTTGAATGCTCTGTCTCAAGCATTGAGAAAAACAGAGGAAGCATATCTGCAAAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTAATGGGTTCTTGTGTTTTGGTGATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGATAGCCGTGCTATTGTAGCGCAGCAATTCGAACCGGATTTCGGGACTGGAAAACCATACAGAGACTTGGAGAGAATCAATGAAGGAACAATGCGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAAATTAAAAGCGTTGGCTTCCCATCAGCTTACAATGGACCACAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGACGACGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACACGAGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTACGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTATGCCATTATAAACTCAGCCCAACGGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACTTTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGATCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAACTGCTTGATATCCCACAAGGGGAGCGACGGAAGTACCATGATGACGTTTCGGTAATCATCATTTCATTTGAAGGAAGAATGTGGCATTCGTTGATGTAA 2139 45.68 MGNRIGKIGHCFAGAGDISRRYDPADIISDPHDGGFGHSFYYLPPDPHTLSSSKDFSDVYISPVTIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCTNSFASVPLQPVPRHSVSGNSGGFPFSGPMERGFLSGPLAARSFESGPIDRVVHSGPVEKDGGPEKLQRSVSQGGVGDREPKLKKRRRRRNLIRILKRAISKTISRNKHNENGAASAGQTQSSVHLSSHGSLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKSGLIWSDKFDSTATSSSMNSSNSASTEEDDHRTNHMKNQESDHQSTENILPENDVVNLEADLVRKRERVHNTNYRTSQLMKKADQNPKNWKCEWERERLGLEGKLNNNRQIDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGTMRVFESSNGVEFEKLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRMWHSLM* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14662814 14666238 - CsaV3_4G025000.1 Csa04g01492 527102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01492 712 MobiDBLite consensus disorder prediction 209 235 - -
Csa04g01492 712 MobiDBLite consensus disorder prediction 316 351 - -
Csa04g01492 712 ProSiteProfiles PPM-type phosphatase domain profile. 246 703 IPR001932 -
Csa04g01492 712 Pfam Protein phosphatase 2C 414 675 IPR001932 -
Csa04g01492 712 SMART PP2C_4 235 701 IPR001932 -
Csa04g01492 712 SUPERFAMILY PP2C-like 257 705 IPR036457 -
Csa04g01492 712 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 710 - -
Csa04g01492 712 MobiDBLite consensus disorder prediction 211 235 - -
Csa04g01492 712 MobiDBLite consensus disorder prediction 155 193 - -
Csa04g01492 712 PANTHER PROTEIN PHOSPHATASE 2C 20 710 IPR015655 GO:0004722|GO:0006470
Csa04g01492 712 Gene3D - 221 709 IPR036457 -
Csa04g01492 712 MobiDBLite consensus disorder prediction 330 347 - -
Csa04g01492 712 CDD PP2Cc 422 703 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00189 Csa-Chr3:1405926 Csa04g01492 Csa-Chr4:14662814 8.32E-39 dispersed
Csa04g01492 Csa-Chr4:14662814 Csa06g03363 Csa-Chr6:28014814 5.67E-38 dispersed
Csa03g01460 Csa-Chr3:10886692 Csa04g01492 Csa-Chr4:14662814 1.93E-14 transposed
Csa04g01492 Csa-Chr4:14662814 Csa06g01491 Csa-Chr6:12600999 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01492 - - csv:101213757 1410.59