Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01497 ATGGCTTCTTCTCTTTCTCTCCTCTTCTCCCTCTTCCTCTCCTCCCTCTTTCTCCTCTCTCACGCCAGAATCCCTGGCGTCTACTCGGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTACGGCGGCAGCGATGCCTCTGGAACCATGGGTGGTGCTTGTGGGTATGGTAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCTGCTCTCAGTACTGCTCTTTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTTGAGATCAAGTGTGCTAATGACCCTCGATGGTGCCATCCCGGTAGCCCTTCTATTTTCATTACGGCTACCAATTTTTGTCCCCCTAATTTTGCTCTTCCTAATGACAATGGTGGTTGGTGTAACCCTCCTCGCACTCATTTCGACCTTGCTATGCCTATGTTCCTCAAGATAGCTGAGTACCGAGCTGGAATTGTACCCGTCTCTTACCGCCGGGTGCCATGTAGGAAACAAGGAGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAATTTGGTATTAATCACTAACGTAGCCGGTGCAGGAGATATCGTGAAGGTTAGCGTAAAAGGATCAAACACCGGTTGGATGAGCATGAGCCGTAACTGGGGCCAAAATTGGCAATCCAACGCTGTTTTAGTGGGTCAGACCCTTTCCTTCCGCCTCACCGGCAGTGACCGTAGAACTTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTTGGTCAGACATTCACCGGAAAGAATTTCCGCATTTGA 780 50.51 MASSLSLLFSLFLSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTGWMSMSRNWGQNWQSNAVLVGQTLSFRLTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRI* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14702397 14704826 - CsaV3_4G025050.1 Csa04g01497 527107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01497 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Csa04g01497 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Csa04g01497 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Csa04g01497 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Csa04g01497 259 Gene3D - 21 161 IPR036908 -
Csa04g01497 259 Gene3D - 165 257 IPR036749 -
Csa04g01497 259 PANTHER EXPANSIN 3 258 - -
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Csa04g01497 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Csa04g01497 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Csa04g01497 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Csa04g01497 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Csa04g01497 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Csa04g01497 259 SMART dpbb_1 68 155 IPR007112 -
Csa04g01497 259 PANTHER EXPANSIN-A15 3 258 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01497 Csa-Chr4:14702397 Csa05g00892 Csa-Chr5:6920508 2.31E-128 dispersed
Csa05g00340 Csa-Chr5:2174486 Csa04g01497 Csa-Chr4:14702397 7.67E-95 dispersed
Csa06g01206 Csa-Chr6:10229418 Csa04g01497 Csa-Chr4:14702397 1.49E-93 dispersed
Csa06g02628 Csa-Chr6:23121300 Csa04g01497 Csa-Chr4:14702397 1.41E-102 dispersed
Csa04g00873 Csa-Chr4:6212596 Csa04g01497 Csa-Chr4:14702397 6.61E-100 transposed
Csa01g02423 Csa-Chr1:21492231 Csa04g01497 Csa-Chr4:14702397 1.47E-165 wgd
Csa04g01497 Csa-Chr4:14702397 Csa05g01856 Csa-Chr5:21845772 2.10E-150 wgd
Csa04g01497 Csa-Chr4:14702397 Csa05g00717 Csa-Chr5:4890874 1.54E-169 wgd
Csa04g01497 Csa-Chr4:14702397 Csa06g01479 Csa-Chr6:12545225 3.52E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01497 - - csv:101212872 526.939