Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01513 ATGGCATCTTCTTCTTTTTTGTTCATCATTTTTTTCTTGTCTCTAATTTTTCTCTCCACACATACCTTATCTTCTCACTACACCCAACTCTTCTACCCTGGTTTCTATGGATCCATCGACATAACTTTGAAAGAATCTGCAGAAATTGAAAGCAATGGAGTTTTGAGGCTCACCAGTCGTAATTCCCGAAACAACATCGGCCAGGCCTTTTACTCCTCTCCAATCCAGTTCAAAAACTCCTCCAGCGACGGTGGCCGTGGACCCTCTTTCTCCACTTGTTTTGTCTTCTGTATCATCCCCGAGAACGAGGGCGGCCATGGATTTACTTTCGCCATTGTCCCTTCTAAAGATCTCAAAGGCATTTCTCAGAGGTTTCTTGGACTCTTCAACGAATCCAATTTCTATGGGATACTTTCAAATCATATCTTCGCTGTGGAATTCGATACAATCTTCGATGTTGGGATCAAAGATATAGATAACGATCATGTGGGGATTGATTTAAACAGCTTGATTTCGAATGCCACTGTTCACGCTGCTTATTTTGACGAATTGGGTAAAGTTCATAATCTCTCACTTCAAAGTGGGAAGCCGATTAAAGTTTGGATTGATTATGATTCTGATGAAATCACTCTCAATGTTACGATTTCCCCTTTTAATTCAAAACCCAGAAACCCAATTCTGTCTTACAGAGTGGATCTTTCATCGATTTTTTATGAAGAAATGTACATTGGATTTACTGCATCAACAGGCTTACTTTCTAGAAGCTCACAGTTCATTTTAGGTTGGAGTTTCGCCATTAATGGCCAAGCTCGAGATCTTGATATCTCTTCACTTCCTTTACCCAAAAAGAAGAAAACAAGGGAGAAAATCAGTCTCCCTGTTTATGTATCTATAACAACTGCCAGTGTTTTTGTGATCTCTGTTTTCGTTTTGGGTTTTTATCTCTTACGAAAGTGCAAAAAATCCGAAGAAATCGAACCGTGGGAGCTTCAATTAGGACCTCATCGATATTCCTACAGAGAATTAAAAAAAGCTACAAGAAATTTCAGCGAGAAGGAGCTTCTGGGGTATGGCGGATCTGGGAAAGTATACAGAGCAATCCTTCCAATTTCGAAAACCCAAATCGCCGTTAAGCGAATATGTCACGATTCAAAACAGGGTCTCCGGGAATTCATGACGGAGATCGCCACAATTGGAATGCTCCGTCACCGAAATCTGGTTCAGTTGTTAGGATGGTGTCGGCGGGAACGAGATCTGCTTCTTGTTTACGAGTTTATGGAGAATGGAAGCTTAGATAATTACTTATTCGACGATCCAGTAAGGATTTTGGATTGGGAAGAGAGATTCAAAGTGATTAAGGGAGTTGCCTCTGCTCTGCTTTATCTTCACGAGGGGTATAAACAGGTGGTGATTCATAGAGACGTGAAGGCAAGCAATGTGTTATTAGACGGCGAATTGAATGGAAAATTGGGGGATTTCGGGCTGGCAAAGGTGTACGAACACGGATCGGCACCGGATACCACTCGGGTAGTCGGAACTTTGGGGTATTTAGCACCAGAGCTGCCAAGAACAGGAAAATCGACGACGAGCTCCGATGTATACGCGTTTGGGGCTTTAATGCTGGAAGTGGCATGTGGGCGGCGGCCAGTGGAGGTGAAGGCGTTGCCGGAGGAGATGACGTTGGTGGATTGGATTTGGGATAAATACAGAGAAGGGCAGGTTTTGTCGGTCGTGGATTCGAAGCTCCAGGGAGTTTACGACGAGGTAGAGCTGACGATGGTGTTGAAATTGGGGGTAATGTGTTCGAATAATGTGCCGGAGCAAAGGCCGAGTATGAGGCAGGTAGTGCGGTGTTTGGACGGAGAAATTGGCGTCGTCGATGAATGGAAGTCGCCCGGCGGCGGAAGTAAGGGCGGTGGGGTGGGGGATTTTCTTGGGTCATTTACGTCCACGTCCATCAGTGGAGAAAGCTCCGGTTAA 1980 44.39 MASSSFLFIIFFLSLIFLSTHTLSSHYTQLFYPGFYGSIDITLKESAEIESNGVLRLTSRNSRNNIGQAFYSSPIQFKNSSSDGGRGPSFSTCFVFCIIPENEGGHGFTFAIVPSKDLKGISQRFLGLFNESNFYGILSNHIFAVEFDTIFDVGIKDIDNDHVGIDLNSLISNATVHAAYFDELGKVHNLSLQSGKPIKVWIDYDSDEITLNVTISPFNSKPRNPILSYRVDLSSIFYEEMYIGFTASTGLLSRSSQFILGWSFAINGQARDLDISSLPLPKKKKTREKISLPVYVSITTASVFVISVFVLGFYLLRKCKKSEEIEPWELQLGPHRYSYRELKKATRNFSEKELLGYGGSGKVYRAILPISKTQIAVKRICHDSKQGLREFMTEIATIGMLRHRNLVQLLGWCRRERDLLLVYEFMENGSLDNYLFDDPVRILDWEERFKVIKGVASALLYLHEGYKQVVIHRDVKASNVLLDGELNGKLGDFGLAKVYEHGSAPDTTRVVGTLGYLAPELPRTGKSTTSSDVYAFGALMLEVACGRRPVEVKALPEEMTLVDWIWDKYREGQVLSVVDSKLQGVYDEVELTMVLKLGVMCSNNVPEQRPSMRQVVRCLDGEIGVVDEWKSPGGGSKGGGVGDFLGSFTSTSISGESSG* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14803634 14806609 + CsaV3_4G025210.1 Csa04g01513 527123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01513 659 CDD lectin_legume_LecRK_Arcelin_ConA 28 268 IPR001220 GO:0030246
Csa04g01513 659 Pfam Protein kinase domain 349 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01513 659 Gene3D - 29 275 - -
Csa04g01513 659 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01513 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Csa04g01513 659 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 10 633 - -
Csa04g01513 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 281 IPR013320 -
Csa04g01513 659 Pfam Legume lectin domain 30 278 IPR001220 GO:0030246
Csa04g01513 659 SMART serkin_6 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01513 659 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Csa04g01513 659 Gene3D Transferase(Phosphotransferase) domain 1 426 628 - -
Csa04g01513 659 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Csa04g01513 659 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Csa04g01513 659 PANTHER - 10 633 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03163 Csa04g01513 CCT
Csa03g03163 Csa04g01513 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03162 Csa-Chr3:29326367 Csa04g01513 Csa-Chr4:14803634 0 dispersed
Csa03g03163 Csa-Chr3:29330047 Csa04g01513 Csa-Chr4:14803634 0 dispersed
Csa04g01513 Csa-Chr4:14803634 Csa07g00449 Csa-Chr7:3219558 1.43E-132 dispersed
Csa04g01511 Csa-Chr4:14785016 Csa04g01513 Csa-Chr4:14803634 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78159 PF00069 Pkinase 4.30E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01513 - - csv:101205197 1243.02