Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01519 ATGGAAACCCATCTTCCCTCCCTGTTTTTTCTTCTCATTTTCCTCTCATTTCTCCTCCACTGTCCGGCCAAGCGCTGCCCGGACTGCGGCCGCACGCCGGTGCCGTACCCACTCAGCACGCGCCCGGATTGCGGTGACCCTCTTTACAGAGTCCGTTGCGCCGCTGCCGAGCTCTGGTTCGAGTCCGCAAATGGGTCTTCGTATTTGATCACTTCCGTTAATTCAGTAGCTCGGAAGCTGATCATCCGGCCGCCGGGGTTGGCCAAAAACACCTGCGTGTCATCGGATTTTCGGACCGATGGTTTTTGGCTCGATACGCGCCTTCCTTTCACTATTTCCGATAGAAACACGGTTTTGCTCTATAACTGTTCGATTGAAGTCCTCGAAAATAATTGGAACTGTTCACACAATAGCGTCTGTCATGACTTTATCAAGCAGAATCCGGTGGCAATGGCGGCGTGTAAGACGGCGCCGACGTGCTGTTGGTACACGAGTGGCGGTTCCTTGACTTCGTATAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAGTGTTTTGTTAATTTGGGTGGTTCTGCTCCGGCGAAGAAGTGGCCGGAACCTGGGGTGGAGATTCAATGGGCACCACCGCGAGAACCACCGTGTCGTGTGGCTATGGACTGCCGGAATTGGGAGAATTCTGCTTGTTTGCCGGACCATACAAACCCCAAGCAGAAGAGGTGCTTATGTAAGGTGCCTTCCAAGTGGGATCCTGTAAATGGATTGTGTAATGGCAATAATTTGAAAATACAGAACAAGACAATTCATAAGAAGAAGCACAAGAAGGTGCCTGTTATTCTTGGGGGAGTAATGGCAGGAGTATTTCTAATGGTGATTGGAGGCTCAATCATATTTGTAATTTCCAAAAGACGTGAACAGCTTCCAAAAAGGAACGAGCTGAGTTCAAAACAAGTTCGTGAAGTGATTCTAACTGCTAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCCACAAACAACTTCTCCAAAGAGAATTTGCTTGGTTCCGGTGGCTATGGAGAAGTCTTCAAAGGCAATCTAGAAGATGGAACTTTAGTAGCTGTTAAACGTGCCAAGCTGGGTAGCATGAAGGGAATTGATCAAATCCTAAACGAAGTTAGGATTCTTTGTCAGGTGAACCATCGATACCTTGTTCGTCTACTCGGATGTTGTCTCGAACTTGAGCAACCACTCTTAATATATGAGTACATCTCAAATGGGAACCTATTTGATCACCTTCATGGGAATACAAGTTCAAGCAAGTGGCCACCATTGACATTAAGTCATCGACTCTACATTGCTCGGCAAACAGCCGATGGCCTTGCTTATCTCCACACTTCAGCCATGCCTCGAATCTATCACCGAGACATAAAGTCGAGCAACATTCTACTAGATGAGAAGTTGAATGCTAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAGTCAAGCCATATTACAACTGGGGCACAGGGAACATTAGGCTATCTAGACCCAGAATATTACCTAAACTTTCAATTGACAGATAAGAGTGATGTTTACAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCTGAGAAAGCCATTGATTTTAATAGAGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATCATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATTAAACATAGAGCAAGCAGAGTTGAAGTGGAGATAATCAAAGCATTGGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTACCATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTCCATTCTTAACAATGAGGTTAGAAATATTGAATAA 1920 45.36 METHLPSLFFLLIFLSFLLHCPAKRCPDCGRTPVPYPLSTRPDCGDPLYRVRCAAAELWFESANGSSYLITSVNSVARKLIIRPPGLAKNTCVSSDFRTDGFWLDTRLPFTISDRNTVLLYNCSIEVLENNWNCSHNSVCHDFIKQNPVAMAACKTAPTCCWYTSGGSLTSYRIRVRKERCSAYECFVNLGGSAPAKKWPEPGVEIQWAPPREPPCRVAMDCRNWENSACLPDHTNPKQKRCLCKVPSKWDPVNGLCNGNNLKIQNKTIHKKKHKKVPVILGGVMAGVFLMVIGGSIIFVISKRREQLPKRNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTLVAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSHRLYIARQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKHRASRVEVEIIKALGSLAAACLDEKRQNRPTMKEVADELANIISILNNEVRNIE* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14847537 14849907 + CsaV3_4G025270.1 Csa04g01519 527129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01519 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 630 IPR045274 GO:0007166
Csa04g01519 639 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Csa04g01519 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Csa04g01519 639 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Csa04g01519 639 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Csa04g01519 639 Pfam Protein tyrosine and serine/threonine kinase 351 624 IPR001245 GO:0004672|GO:0006468
Csa04g01519 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 25 630 - -
Csa04g01519 639 Coils Coil 621 639 - -
Csa04g01519 639 SMART serkin_6 348 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01519 639 ProSiteProfiles Protein kinase domain profile. 348 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01519 639 CDD STKc_IRAK 354 627 - -
Csa04g01519 639 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01519 Csa-Chr4:14847537 Csa06g00136 Csa-Chr6:890174 0 dispersed
Csa06g00757 Csa-Chr6:6116077 Csa04g01519 Csa-Chr4:14847537 4.69E-65 dispersed
Csa04g01519 Csa-Chr4:14847537 Csa06g02887 Csa-Chr6:25086747 8.14E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78160 PF07714 PK_Tyr_Ser-Thr 3.10E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01519 - - csv:101204219 1268.45