Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01535 ATGGCTTCCTGCCCCATAAATCTTCCTCACCGGTGTTCTCCCGGAACGCCGCCCCTCGGCCCCACTTCTTCCCTCCTAAACCCTAATTCTCTTCTTAAATTACTTCCTCTTTCTCCTTCTTCTCTTCTCTATTCCAATAAGCTATCCTCTTCCAGAATCCGCCACCGCAGCCTTGTTGCCATGAACAACGCTCACATGGCCACCGAGGCCAAGCCTGTTTCACAGGATAGAATGCTCGTTTATGTGCCGCCTCATCCGTTGATCAAACACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGTTAGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACAGGGGAGATACAGTCACCCATGGGTGTTGCTTCAGTTGAGTTTGTTGATCCAAGAGAACCTGTGGCAATAATTCCCATCCTTAGAGCTGGTCTAGCTCTTGCAGAATATGCATCGTCTGTATTGCCTGCAACAAAATTGTACCATCTTGGGATAAGCAGGGACGAGGAGACTCTTCAACCAACTGTATATCTTAATAAATTACCTGAAAATTTTCCTGAAGGTTGTAGAATCTTTGTGGTCGATCCCATGCTTGCAACTGGTGGCACAATTGTGGCAGCTCTTGATCTCCTAAAGGAACGTGGAATTGGCAACAAGCAAATAAAAGTGATATCTGCTGTTGCTGCCCCTCCCGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTACATATATACACCGGCATTATTGACCCGACAGTTAATGAAAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGAGATCGCAGCTTCGGGACATGA 870 46.21 MASCPINLPHRCSPGTPPLGPTSSLLNPNSLLKLLPLSPSSLLYSNKLSSSRIRHRSLVAMNNAHMATEAKPVSQDRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAEYASSVLPATKLYHLGISRDEETLQPTVYLNKLPENFPEGCRIFVVDPMLATGGTIVAALDLLKERGIGNKQIKVISAVAAPPALQKLSEKFPGLHIYTGIIDPTVNEKGFIIPGLGDAGDRSFGT* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14949717 14955850 + CsaV3_4G025430.1 Csa04g01535 527145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01535 289 CDD PRTases_typeI 145 265 IPR000836 -
Csa04g01535 289 PANTHER URIDINE KINASE 39 285 - -
Csa04g01535 289 SUPERFAMILY PRTase-like 80 288 IPR029057 -
Csa04g01535 289 TIGRFAM upp: uracil phosphoribosyltransferase 80 289 IPR005765 GO:0004845|GO:0006223
Csa04g01535 289 Gene3D - 69 289 IPR029057 -
Csa04g01535 289 Pfam Uracil phosphoribosyltransferase 82 289 - -
Csa04g01535 289 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 39 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01535 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01535 Csa-Chr4:14949717 Csa07g01059 Csa-Chr7:10086934 8.81E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01535 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.73493 0.211255 0.402629 0.199248 0.0 0.178596