Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g01545 | ATGGCGGAGGGTTTTGAAGTTTACGGCCATGTCCCACAACAAAGCCGGAGAGACAAGCTTAGAATTGGAATTGGTAATACTATTTCTACTAATCAAATTCATCATAATCATCATCATCATCATCATAATAATTTCTTCCCTTTATATCATGATCCTTCTTCTTTTTTTTCACCCGATTTTGATGATTTTCATCAAAACCCCTCCTCTAATTTTCAACTTTTTCATCATAATTACCCTTCCTCCGCCCTCCCTCCTCTCCCCTCCGACCAACAACCACCACCCTTATCCCTTGACCTTAACCTCCAACACCGTTACGCCTCCTTTCGTTCCACTTCCCTTTTAAAAACCTCTAAATTCTTCAAGCCAGCTCAGCAACTCCTCCATGATTTATTTGATTACGCCGCCCCTAACATCTCCGACGACAAGCTCCTGCCGGATTCCGCCGTTTTTGACTCCTTGGAAGGTGATATTCCCATCGCCCCCGCGGCTGATGAAACCCACACCACAAAATCTAGGCTTATTACCATGCTTCACGAGGTTTATAGAAGATATAAGCTATACTATCAGCAAATGCAAGCAGTGGTTACGACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCATAAAAGCCATGTTTAAGCACTTCAGATTCTTAAAAAATGCCATAGCCGACCAGCTCCAATTCAACAAGCAACAGCAGCAGCAACCAAACCCTTATTCTCAAAGATCTATTCACAACCACAGTCCCGGATTTCTTGATCACCAACCTGTCTGGCGCCCGCAGAGAGGCCTCCCCGAGAGCGCCGTCACCATCCTCCGAGCTTGGCTCTTTGAGCACTTCCTTCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACTGGACTCTCGAGAAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGACTTTGGAAACCAATGGTTGAAGAAATCCATATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGACAAGAACAACAATAACAACAATATTGAAAATAATAGTGCCTTAAACAACATCAACAACAACAACGATCCTCTTTCCTCCACAAATGAATCCTTACTAAAACCTCACCACAACAATAATGCATCTTCTTCAAACCACCACCACCATCCTTCTCTAGATTTGTCCAACACCAATTTCTTTCCCACCCACCACCCTCACGCCGCCCCCGGCAACATTTCCTTAACTCTCGGCCTCCACCAGAACCACCCTGGCGGTATCGCTCTCACGGAGCCATTTCCCATCAATGCAGCTCATCATTTTAACCTTGGCTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA | 1386 | 44.81 | MAEGFEVYGHVPQQSRRDKLRIGIGNTISTNQIHHNHHHHHHNNFFPLYHDPSSFFSPDFDDFHQNPSSNFQLFHHNYPSSALPPLPSDQQPPPLSLDLNLQHRYASFRSTSLLKTSKFFKPAQQLLHDLFDYAAPNISDDKLLPDSAVFDSLEGDIPIAPAADETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAIKAMFKHFRFLKNAIADQLQFNKQQQQQPNPYSQRSIHNHSPGFLDHQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEDKNNNNNNIENNSALNNINNNNDPLSSTNESLLKPHHNNNASSSNHHHHPSLDLSNTNFFPTHHPHAAPGNISLTLGLHQNHPGGIALTEPFPINAAHHFNLGLEANGEGFVNEWF* | 462 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 15002380 | 15007452 | - | CsaV3_4G025530.1 | Csa04g01545 | 527155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g01545 | 461 | CDD | homeodomain | 265 | 326 | IPR001356 | GO:0003677 | |
| Csa04g01545 | 461 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 64 | 441 | - | - | |
| Csa04g01545 | 461 | Pfam | Associated with HOX | 114 | 230 | IPR006563 | - | |
| Csa04g01545 | 461 | Gene3D | - | 268 | 330 | - | - | |
| Csa04g01545 | 461 | SMART | HOX_1 | 265 | 329 | IPR001356 | GO:0003677 | |
| Csa04g01545 | 461 | Pfam | Homeobox KN domain | 282 | 321 | IPR008422 | GO:0003677|GO:0006355 | |
| Csa04g01545 | 461 | SUPERFAMILY | Homeodomain-like | 267 | 332 | IPR009057 | - | |
| Csa04g01545 | 461 | SMART | prehox3 | 108 | 231 | IPR006563 | - | |
| Csa04g01545 | 461 | Coils | Coil | 337 | 357 | - | - | |
| Csa04g01545 | 461 | MobiDBLite | consensus disorder prediction | 236 | 255 | - | - | |
| Csa04g01545 | 461 | MobiDBLite | consensus disorder prediction | 336 | 411 | - | - | |
| Csa04g01545 | 461 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 64 | 441 | - | - | |
| Csa04g01545 | 461 | ProSiteProfiles | 'Homeobox' domain profile. | 262 | 325 | IPR001356 | GO:0003677 | |
| Csa04g01545 | 461 | MobiDBLite | consensus disorder prediction | 236 | 264 | - | - | |
| Csa04g01545 | 461 | MobiDBLite | consensus disorder prediction | 344 | 407 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa03g03143 | Csa04g01545 | CCT | |
| Csa03g03143 | Csa04g01545 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g03494 | Csa-Chr3:31283814 | Csa04g01545 | Csa-Chr4:15002380 | 1.03E-58 | dispersed | |
| Csa04g01545 | Csa-Chr4:15002380 | Csa06g02874 | Csa-Chr6:25012164 | 4.59E-63 | dispersed | |
| Csa03g03143 | Csa-Chr3:29231761 | Csa04g01545 | Csa-Chr4:15002380 | 2.09E-110 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31567 | PF07526 | POX | 2.00E-28 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g01545 | - | - | csv:101221147 | 848.195 |