Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01557 ATGGCCGGAGAAGAGGAAGTGAAAGTGTTTGGTTTCCGCTCAGGTTCGTATAGTCGGAGAGTGGAGTTAGCTTTTAAACTCAAAGGCGTCGATTATGAACACATTGATGAAGATTTGCTTAACAACAATAAGAGCGATTTGTTGCTGAAATACAACCCAATTTACCAGAAAGTGCCGGTTCTTGTCCACAATGGAAAACCCATTTCAGAGTCTCGTGTAATCCTTGAATACATCGACGAAACTTGGACCCAAAATTATGCCATCTTGCCTACAGATCCCTATGAAAGAGCTCTTGCCAGATTCTGGGCTAAGTATATTGATGAAAAGGTTGTGCCTGCGATAGAGAAAGCTTTTAGAAGCAATGAAGAAGAAAGAGAGAAGAGAATAGAAGAAGCTCAAGAGATGCTAGAACCACTTGAGAAAGAGCTTCAAAACAAGTTATTCTTTGGAGGAGACAAAATTGGATTTGTTGACATTGTAGGTCTGGTTATACCAGGCTGGATGCATGCCAGTCAAGAAGCTGCAGGCTTTGAAGTTCTAACAATTCACAAATTTCCAAACCTAAACAGATGGATTCAAGATTATTTGAACCACAGCGTTGCAAAGGAAGTTCTACCGCAAAAGGATTTTCTTGTTGCATTTTTGAGCAAAGTTGTGTTTGGTAGAAATAACTAG 675 40.0 MAGEEEVKVFGFRSGSYSRRVELAFKLKGVDYEHIDEDLLNNNKSDLLLKYNPIYQKVPVLVHNGKPISESRVILEYIDETWTQNYAILPTDPYERALARFWAKYIDEKVVPAIEKAFRSNEEEREKRIEEAQEMLEPLEKELQNKLFFGGDKIGFVDIVGLVIPGWMHASQEAAGFEVLTIHKFPNLNRWIQDYLNHSVAKEVLPQKDFLVAFLSKVVFGRNN* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15098037 15099311 + CsaV3_4G025650.1 Csa04g01557 527167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01557 224 Pfam Glutathione S-transferase, N-terminal domain 6 80 IPR004045 -
Csa04g01557 224 Pfam Glutathione S-transferase, C-terminal domain 101 196 IPR004046 -
Csa04g01557 224 CDD GST_N_Tau 7 82 - -
Csa04g01557 224 Coils Coil 122 142 - -
Csa04g01557 224 SUPERFAMILY Thioredoxin-like 7 111 IPR036249 -
Csa04g01557 224 SUPERFAMILY GST C-terminal domain-like 80 217 IPR036282 -
Csa04g01557 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Csa04g01557 224 PANTHER GLUTATHIONE S-TRANSFERASE U8 5 215 - -
Csa04g01557 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 86 IPR004045 -
Csa04g01557 224 Gene3D - 92 220 - -
Csa04g01557 224 Gene3D Glutaredoxin 1 91 - -
Csa04g01557 224 CDD GST_C_Tau 93 217 IPR045074 GO:0004364|GO:0006749
Csa04g01557 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 215 IPR045073 -
Csa04g01557 224 SFLD Glutathione Transferase (cytosolic) 4 217 IPR040079 -
Csa04g01557 224 SFLD Main.3: Omega- and Tau-like 4 217 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01557 Csa-Chr4:15098037 Csa04g01560 Csa-Chr4:15111249 2.05E-85 dispersed
Csa05g01429 Csa-Chr5:15390580 Csa04g01557 Csa-Chr4:15098037 1.45E-49 dispersed
Csa04g01556 Csa-Chr4:15093556 Csa04g01557 Csa-Chr4:15098037 5.26E-09 tandem
Csa04g01557 Csa-Chr4:15098037 Csa04g01558 Csa-Chr4:15100702 5.88E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01557 K00799 - csv:101220464 435.647