Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01558 ATGGCCGGAGAAGATCAGGAAGTGCAGGTTTTTGGCTTCCGATCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTCAAACTCAAAGGCGTCGTTTATGAACATATTGATGAAGATTTGGTGAACAAAAAGAGCGATTTGTTGGTGAAATACAACCCGATTTACAAGAAGGTTCCTGTTCTTGTTCATCATGGAAAACCCATTTCAGAGTCTCTTGTAATTCTTGAGTACATCGATGAAACTTGGACAGAAAATTATGCCATCTTGCCTCAAGATCCTTATCAAAGAGCTCTTGCCAGATTCTGGGCTAAGTATATTGATGATAAGGTTGTGCCTGCAGCACAAAAAGTTGCAAGAAGCCAAGAAGACGAAAGAGAGAAGAGTATAGAAGACGCACAAGCGACACTTGAACCACTTGAGAAAGAACTTGAAAACAAGTCGTTCTTTGGAGGAGACAAAATTGGATTTGTTGACATTGTAGGCCTAGTTTTAGCTCGTTGGGTTCCTGCCACTGAAGAAGCCGTAGGCTTTGAGCTTTTATCAGCCCACAAGTTTCCAAATCTAACTAAATGGAGTCAAAATTTTGTGAACCACAGTGTTGCAAAGGAAGTTCTGCCTAAAAAAGATGTTCTTGTTGCCTTTTTGAAGAATGTTGTGTTTAGTACAAAAAACTAG 675 40.44 MAGEDQEVQVFGFRSGPYSLRVELALKLKGVVYEHIDEDLVNKKSDLLVKYNPIYKKVPVLVHHGKPISESLVILEYIDETWTENYAILPQDPYQRALARFWAKYIDDKVVPAAQKVARSQEDEREKSIEDAQATLEPLEKELENKSFFGGDKIGFVDIVGLVLARWVPATEEAVGFELLSAHKFPNLTKWSQNFVNHSVAKEVLPKKDVLVAFLKNVVFSTKN* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15100702 15104888 + CsaV3_4G025660.1 Csa04g01558 527168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01558 224 Pfam Glutathione S-transferase, N-terminal domain 8 80 IPR004045 -
Csa04g01558 224 SUPERFAMILY GST C-terminal domain-like 80 217 IPR036282 -
Csa04g01558 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 220 IPR010987 -
Csa04g01558 224 SFLD Main.3: Omega- and Tau-like 5 217 IPR045073 -
Csa04g01558 224 SFLD Glutathione Transferase (cytosolic) 5 217 IPR040079 -
Csa04g01558 224 Pfam Glutathione S-transferase, C-terminal domain 109 197 IPR004046 -
Csa04g01558 224 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 1 220 - -
Csa04g01558 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 220 IPR045073 -
Csa04g01558 224 Gene3D Glutaredoxin 1 88 - -
Csa04g01558 224 SUPERFAMILY Thioredoxin-like 7 111 IPR036249 -
Csa04g01558 224 CDD GST_N_Tau 8 82 - -
Csa04g01558 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 86 IPR004045 -
Csa04g01558 224 Gene3D - 89 223 - -
Csa04g01558 224 CDD GST_C_Tau 93 216 IPR045074 GO:0004364|GO:0006749
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01555 Csa-Chr4:15091032 Csa04g01558 Csa-Chr4:15100702 2.41E-97 dispersed
Csa04g01558 Csa-Chr4:15100702 Csa04g01568 Csa-Chr4:15155505 4.61E-96 dispersed
Csa04g01557 Csa-Chr4:15098037 Csa04g01558 Csa-Chr4:15100702 5.88E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01558 K00799 - csv:101215228 448.358