Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01560 | ATGGCGATGGCGGAAGAAGTGGAATTGTTTGGTGGATGGATGAGTCCATTTAGCCGGAGAGTGGAGTTGGGTTTGAAACTCAAAGGCATTGATTATAAATATCATGAAGAAGATTTGAAGAACAAAAGTGATTTCCTTTTGACTTACAACCCAATTTACAAGAAAGTCCCTGTTTTTCTTCACAACGGAAACCCCATCTCAGAGTCACTTATAATTCTTGAGTACATCGATCAAGTTTGGAACTCACTTTATCCTTTCTTTCCTCAACAAAATCCCTACGAAACAGCTCAAGCAAGATTCTGGGCTAATTATATAGATGACAAGGTTTTGGCTGCTACACTGAAGGCTGCAAAAAGCAGCAAAAGAGAAGAGAGAGAGAAGGGTTTGGAAGAAACCGAGGAGACATTAAAACCACTTGAGAAAGAGCTTCAAAACAAGAAGTTCTTTGGAGGAAATAAAATTGGAATTGTGGACATTGTTGGAACTGTAATTGCATATTGGATCCCAGCCATTGAAGAAGCTTTTGGATTTGAGCTGTTAACAACAAAAAAGTTTCCAAAGTTAACCAAATGGAGTGAAGAGATTGTAAACAACAGTGTGGTGAAGCAGGTTTTGCCCCCAAAATCTAACCTTGTGGCCTACTTGCAAACTGTTTTAACAACCAAATAG | 669 | 38.86 | MAMAEEVELFGGWMSPFSRRVELGLKLKGIDYKYHEEDLKNKSDFLLTYNPIYKKVPVFLHNGNPISESLIILEYIDQVWNSLYPFFPQQNPYETAQARFWANYIDDKVLAATLKAAKSSKREEREKGLEETEETLKPLEKELQNKKFFGGNKIGIVDIVGTVIAYWIPAIEEAFGFELLTTKKFPKLTKWSEEIVNNSVVKQVLPPKSNLVAYLQTVLTTK* | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15111249 | 15112010 | + | CsaV3_4G025680.1 | Csa04g01560 | 527170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01560 | 222 | Gene3D | Glutaredoxin | 3 | 89 | - | - | |
Csa04g01560 | 222 | SFLD | Main.3: Omega- and Tau-like | 3 | 218 | IPR045073 | - | |
Csa04g01560 | 222 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 4 | 217 | IPR045073 | - | |
Csa04g01560 | 222 | SFLD | Glutathione Transferase (cytosolic) | 3 | 218 | IPR040079 | - | |
Csa04g01560 | 222 | Pfam | Glutathione S-transferase, N-terminal domain | 6 | 78 | IPR004045 | - | |
Csa04g01560 | 222 | Coils | Coil | 122 | 142 | - | - | |
Csa04g01560 | 222 | Pfam | Glutathione S-transferase, C-terminal domain | 112 | 197 | IPR004046 | - | |
Csa04g01560 | 222 | CDD | GST_C_Tau | 92 | 216 | IPR045074 | GO:0004364|GO:0006749 | |
Csa04g01560 | 222 | PANTHER | GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN | 4 | 217 | - | - | |
Csa04g01560 | 222 | Gene3D | - | 91 | 221 | - | - | |
Csa04g01560 | 222 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 91 | 215 | IPR010987 | - | |
Csa04g01560 | 222 | CDD | GST_N_Tau | 7 | 80 | - | - | |
Csa04g01560 | 222 | SUPERFAMILY | Thioredoxin-like | 2 | 81 | IPR036249 | - | |
Csa04g01560 | 222 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 5 | 84 | IPR004045 | - | |
Csa04g01560 | 222 | SUPERFAMILY | GST C-terminal domain-like | 79 | 218 | IPR036282 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01557 | Csa-Chr4:15098037 | Csa04g01560 | Csa-Chr4:15111249 | 2.05E-85 | dispersed | |
Csa04g01560 | Csa-Chr4:15111249 | Csa04g01569 | Csa-Chr4:15158782 | 3.68E-154 | dispersed | |
Csa04g01560 | Csa-Chr4:15111249 | Csa04g01561 | Csa-Chr4:15113056 | 2.57E-93 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01560 | K00799 | - | csv:101214992 | 396.741 |