Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01560 ATGGCGATGGCGGAAGAAGTGGAATTGTTTGGTGGATGGATGAGTCCATTTAGCCGGAGAGTGGAGTTGGGTTTGAAACTCAAAGGCATTGATTATAAATATCATGAAGAAGATTTGAAGAACAAAAGTGATTTCCTTTTGACTTACAACCCAATTTACAAGAAAGTCCCTGTTTTTCTTCACAACGGAAACCCCATCTCAGAGTCACTTATAATTCTTGAGTACATCGATCAAGTTTGGAACTCACTTTATCCTTTCTTTCCTCAACAAAATCCCTACGAAACAGCTCAAGCAAGATTCTGGGCTAATTATATAGATGACAAGGTTTTGGCTGCTACACTGAAGGCTGCAAAAAGCAGCAAAAGAGAAGAGAGAGAGAAGGGTTTGGAAGAAACCGAGGAGACATTAAAACCACTTGAGAAAGAGCTTCAAAACAAGAAGTTCTTTGGAGGAAATAAAATTGGAATTGTGGACATTGTTGGAACTGTAATTGCATATTGGATCCCAGCCATTGAAGAAGCTTTTGGATTTGAGCTGTTAACAACAAAAAAGTTTCCAAAGTTAACCAAATGGAGTGAAGAGATTGTAAACAACAGTGTGGTGAAGCAGGTTTTGCCCCCAAAATCTAACCTTGTGGCCTACTTGCAAACTGTTTTAACAACCAAATAG 669 38.86 MAMAEEVELFGGWMSPFSRRVELGLKLKGIDYKYHEEDLKNKSDFLLTYNPIYKKVPVFLHNGNPISESLIILEYIDQVWNSLYPFFPQQNPYETAQARFWANYIDDKVLAATLKAAKSSKREEREKGLEETEETLKPLEKELQNKKFFGGNKIGIVDIVGTVIAYWIPAIEEAFGFELLTTKKFPKLTKWSEEIVNNSVVKQVLPPKSNLVAYLQTVLTTK* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15111249 15112010 + CsaV3_4G025680.1 Csa04g01560 527170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01560 222 Gene3D Glutaredoxin 3 89 - -
Csa04g01560 222 SFLD Main.3: Omega- and Tau-like 3 218 IPR045073 -
Csa04g01560 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 217 IPR045073 -
Csa04g01560 222 SFLD Glutathione Transferase (cytosolic) 3 218 IPR040079 -
Csa04g01560 222 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Csa04g01560 222 Coils Coil 122 142 - -
Csa04g01560 222 Pfam Glutathione S-transferase, C-terminal domain 112 197 IPR004046 -
Csa04g01560 222 CDD GST_C_Tau 92 216 IPR045074 GO:0004364|GO:0006749
Csa04g01560 222 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 217 - -
Csa04g01560 222 Gene3D - 91 221 - -
Csa04g01560 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Csa04g01560 222 CDD GST_N_Tau 7 80 - -
Csa04g01560 222 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Csa04g01560 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Csa04g01560 222 SUPERFAMILY GST C-terminal domain-like 79 218 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01557 Csa-Chr4:15098037 Csa04g01560 Csa-Chr4:15111249 2.05E-85 dispersed
Csa04g01560 Csa-Chr4:15111249 Csa04g01569 Csa-Chr4:15158782 3.68E-154 dispersed
Csa04g01560 Csa-Chr4:15111249 Csa04g01561 Csa-Chr4:15113056 2.57E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01560 K00799 - csv:101214992 396.741