Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01561 ATGGCAGAACAAGTTCAAGTCTTGGGTTTTTGGGAAAGTGCTTTTAGTCGCAGAGTGGAGCTAGCTCTCAAACTCAAAGGCGTAGAATACCAATACTTTGAAGAAGATTTGCCCCATAACAAGAGTGATTTGCTTCTCAAATACAACCCTATTCACAAGAAGGTCCCTGTTCTGCTCCACCATGGTCGACCCATTGCTGAGTCTCTTGTGATTCTGGAATACATTGATGATATCTGGAAAGAAAATTATCCCATCTTGCCCCAACATCCCCACCAAAGAGCTCTTGCCAGATTCTGGGCTAAGTATATCGATGACAAGGTCGTGGGTGCAGTAGTGAAGGCTGCTGGAAGCAGAGGAGAAGATAGAGAGAAGGCTATAGAAGAGGCAAGGGAAGCATTAGAAGCACTTGAGAAAGAGATTGAAAAAAACAATGAACTGTTTGGAGGAGATGATATTGGGTTTGTGGACATTGTTGGGACTGTGATTGCTGGTTGGGTTCCTGCCATTGAAGAATGTTTTGAGTTTCAGCTGCTTACAACTGATAACTTCCCTAACTTGATCAAATGGAGTGATCAGCTTGTTCAGCATTCCATTGTCAACCAGATTCTCCCTCCTAAAAATGAGATTGTTGCCTTTATGAAAGCTAATTGGAAATTTTGA 660 42.42 MAEQVQVLGFWESAFSRRVELALKLKGVEYQYFEEDLPHNKSDLLLKYNPIHKKVPVLLHHGRPIAESLVILEYIDDIWKENYPILPQHPHQRALARFWAKYIDDKVVGAVVKAAGSRGEDREKAIEEAREALEALEKEIEKNNELFGGDDIGFVDIVGTVIAGWVPAIEECFEFQLLTTDNFPNLIKWSDQLVQHSIVNQILPPKNEIVAFMKANWKF* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15113056 15113853 + CsaV3_4G025690.1 Csa04g01561 527171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01561 219 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Csa04g01561 219 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Csa04g01561 219 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Csa04g01561 219 Gene3D - 86 219 - -
Csa04g01561 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Csa04g01561 219 Pfam Glutathione S-transferase, C-terminal domain 109 194 IPR004046 -
Csa04g01561 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 215 IPR045073 -
Csa04g01561 219 CDD GST_C_Tau 90 215 IPR045074 GO:0004364|GO:0006749
Csa04g01561 219 SFLD Main (cytGST) 2 215 - -
Csa04g01561 219 Coils Coil 119 146 - -
Csa04g01561 219 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Csa04g01561 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 213 IPR010987 -
Csa04g01561 219 Gene3D Glutaredoxin 1 85 - -
Csa04g01561 219 CDD GST_N_Tau 5 79 - -
Csa04g01561 219 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01561 Csa-Chr4:15113056 Csa04g01568 Csa-Chr4:15155505 1.83E-149 dispersed
Csa04g01560 Csa-Chr4:15111249 Csa04g01561 Csa-Chr4:15113056 2.57E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01561 K00799 - csv:105435246 390.578