Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g01569 | ATGGGGGAAGAAGTGGAACTGTTTGGTGGATGGATGAGTCCATTTAGCCGGAGAGTGGAGTTGGGTTTGAAACTCAAAGGCATTGATTATAAATATCATGAAGAAGATTTGAAGAACAAAAGTGATTTCCTTTTGACTTACAACCCAATTTACAAGAAAGTCCCTGTTTTTCTTCACAACGGAAACCCCATTTCAGAGTCACTTATAATTCTTGAGTACATCGATCAAGTTTGGAACTCACTTTATCCTTTCTTTCCTCAACAAAATCCCTACGAAACAGCTCAAGCAAGATTCTGGGCTAAGTACATAGATGACAAGGTTTTGGCTGCTACACTGAAGGCTGCAAAAAGCAGCAAAAGAGAAGAGAGAGAGAAGGGTTTGGAAGAAACAGAGGAGACATTAAAACCACTTGAGAAAGAGCTTCAAAACAAGAAGTTCTTTGGAGGAAATAAAATTGGAATTGTGGACATTGTTGGAACTGTAATTGCATATTGGATCCCAGCCATTGAAGAAGCTTTTGGATTTGAGCTGTTAACAACAAAAAAGTTTCCAAAGTTAACCAAATGGAGTGAAGAGATTGTAAACAACAGTGTGGTCAAACAGGTTTTGCCTCCAAAATCTAAACTTGTGGCCTACTTCGAGTTGCAAGTTGTTTCAATAACCAACTAG | 669 | 38.57 | MGEEVELFGGWMSPFSRRVELGLKLKGIDYKYHEEDLKNKSDFLLTYNPIYKKVPVFLHNGNPISESLIILEYIDQVWNSLYPFFPQQNPYETAQARFWAKYIDDKVLAATLKAAKSSKREEREKGLEETEETLKPLEKELQNKKFFGGNKIGIVDIVGTVIAYWIPAIEEAFGFELLTTKKFPKLTKWSEEIVNNSVVKQVLPPKSKLVAYFELQVVSITN* | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 15158782 | 15164631 | - | CsaV3_4G025770.1 | Csa04g01569 | 527179 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g01569 | 222 | CDD | GST_C_Tau | 90 | 213 | IPR045074 | GO:0004364|GO:0006749 | |
| Csa04g01569 | 222 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 89 | 213 | IPR010987 | - | |
| Csa04g01569 | 222 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 3 | 82 | IPR004045 | - | |
| Csa04g01569 | 222 | SUPERFAMILY | GST C-terminal domain-like | 77 | 214 | IPR036282 | - | |
| Csa04g01569 | 222 | CDD | GST_N_Tau | 5 | 78 | - | - | |
| Csa04g01569 | 222 | Gene3D | - | 89 | 221 | - | - | |
| Csa04g01569 | 222 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 3 | 216 | IPR045073 | - | |
| Csa04g01569 | 222 | Pfam | Glutathione S-transferase, N-terminal domain | 4 | 76 | IPR004045 | - | |
| Csa04g01569 | 222 | SFLD | Main.3: Omega- and Tau-like | 2 | 215 | IPR045073 | - | |
| Csa04g01569 | 222 | SFLD | Main (cytGST) | 2 | 215 | - | - | |
| Csa04g01569 | 222 | SUPERFAMILY | Thioredoxin-like | 5 | 106 | IPR036249 | - | |
| Csa04g01569 | 222 | Pfam | Glutathione S-transferase, C-terminal domain | 113 | 195 | IPR004046 | - | |
| Csa04g01569 | 222 | Coils | Coil | 120 | 140 | - | - | |
| Csa04g01569 | 222 | PANTHER | GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN | 3 | 216 | - | - | |
| Csa04g01569 | 222 | Gene3D | Glutaredoxin | 1 | 87 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g01560 | Csa-Chr4:15111249 | Csa04g01569 | Csa-Chr4:15158782 | 3.68E-154 | dispersed | |
| Csa04g01567 | Csa-Chr4:15153192 | Csa04g01569 | Csa-Chr4:15158782 | 2.72E-82 | dispersed | |
| Csa04g01569 | Csa-Chr4:15158782 | Csa03g00999 | Csa-Chr3:8073072 | 2.80E-28 | dispersed | |
| Csa04g01568 | Csa-Chr4:15155505 | Csa04g01569 | Csa-Chr4:15158782 | 2.77E-93 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g01569 | K00799 | - | csv:105435370 | 395.201 |