Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01589 ATGATTGTTTCCATGGACTTAAATGCATCGCCGGTGCCTGAAGACGACGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATATAGCTCCAGAGGAACATATAGTGACTGGTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAGAGAGATCGCTCTCTCGAGAGACCGGTACATGAATACCAACAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGCTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGGATGATTCCTTCCAAGGTTCCTTTGGGGGAATCCTTCAATGATTGTATAGCACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATACATTCGTTTACGAGGTCATTCAGTTCATTTCTCGTCAGAAACAACAATCGAAGAAGTATATTCTTGTCCACTGTACACATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCGCTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTATGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGATGCAGTTGTTTGCCCATCCACACCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAACGGTGAAGCAGTTCCAGATGACGATGATGATGGAGGTCCTGCTGCTCTTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATGTTTTGGGTGATGAGATACCTGAAGACCAAGAACGTGGTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATCCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCGCATCCAGTGTCTCTGAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATCACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCGTACAGAAATGCAAATGATGGCCAAGTTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATAATTGATACTATGCCAGACTCACAGAAGCAAGAGAGAAGATATCTGATATATGATATGATGGCGACTAATTATGTTTCGGTCATTGAGCGCCCTTTCTATGAACGGTGGAAGATGCTTGAAAAAGAAGTGATTGAACCTCGCAATTTTGAGCGCCAGAATATTTATCAAAGCAGAAACCCGCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCTCATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACACATGAGGGTCTTTTGAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCTTGTTTGAGTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAAACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATCGTTGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATTCGGACAGACAAAACAACTCCAAATGATTTCAATACTTATAAGAAGGTAATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTACCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGTGA 2049 41.14 MIVSMDLNASPVPEDDEETFERHEEVYIAPEEHIVTGVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICWMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTSDLNKEGIKYVKIPCKGRDSVPDNKSVNTFVYEVIQFISRQKQQSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYTFYHERKPDAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAALLNENHDDGAQVMTNDDVLGDEIPEDQERGLKQFCYQMLKLNPGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQVEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMATNYVSVIERPFYERWKMLEKEVIEPRNFERQNIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSQVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRR* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15297575 15307765 + CsaV3_4G025970.1 Csa04g01589 527199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01589 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Csa04g01589 682 PANTHER MRNA-CAPPING ENZYME 3 682 - -
Csa04g01589 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 265 IPR020422 GO:0006470|GO:0008138
Csa04g01589 682 MobiDBLite consensus disorder prediction 44 85 - -
Csa04g01589 682 CDD Adenylation_mRNA_capping 325 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Csa04g01589 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Csa04g01589 682 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 682 - -
Csa04g01589 682 SMART dsp_5 18 261 IPR020422 GO:0006470|GO:0008138
Csa04g01589 682 CDD RNA_5'-triphosphatase 89 256 - -
Csa04g01589 682 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g01589 682 SUPERFAMILY Nucleic acid-binding proteins 555 667 IPR012340 -
Csa04g01589 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 277 IPR029021 -
Csa04g01589 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 253 IPR000387 GO:0016311|GO:0016791
Csa04g01589 682 MobiDBLite consensus disorder prediction 278 306 - -
Csa04g01589 682 Gene3D Protein tyrosine phosphatase superfamily 82 295 IPR029021 -
Csa04g01589 682 Gene3D DNA ligase/mRNA capping enzyme 313 550 - -
Csa04g01589 682 Gene3D - 551 659 IPR012340 -
Csa04g01589 682 MobiDBLite consensus disorder prediction 44 66 - -
Csa04g01589 682 Pfam mRNA capping enzyme, C-terminal domain 556 650 IPR013846 -
Csa04g01589 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Csa04g01589 682 Pfam Dual specificity phosphatase, catalytic domain 138 259 IPR000340 GO:0008138|GO:0016311
Csa04g01589 682 PIRSF mRNA_capping_HCE 74 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01589 K13917 - csv:101209960 1369.37