Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01589 ATGATTGTTTCCATGGACTTAAATGCATCGCCGGTGCCTGAAGACGACGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATATAGCTCCAGAGGAACATATAGTGACTGGTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAGAGAGATCGCTCTCTCGAGAGACCGGTACATGAATACCAACAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGCTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGGATGATTCCTTCCAAGGTTCCTTTGGGGGAATCCTTCAATGATTGTATAGCACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATACATTCGTTTACGAGGTCATTCAGTTCATTTCTCGTCAGAAACAACAATCGAAGAAGTATATTCTTGTCCACTGTACACATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCGCTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTATGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGATGCAGTTGTTTGCCCATCCACACCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAACGGTGAAGCAGTTCCAGATGACGATGATGATGGAGGTCCTGCTGCTCTTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATGTTTTGGGTGATGAGATACCTGAAGACCAAGAACGTGGTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATCCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCGCATCCAGTGTCTCTGAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATCACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCGTACAGAAATGCAAATGATGGCCAAGTTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATAATTGATACTATGCCAGACTCACAGAAGCAAGAGAGAAGATATCTGATATATGATATGATGGCGACTAATTATGTTTCGGTCATTGAGCGCCCTTTCTATGAACGGTGGAAGATGCTTGAAAAAGAAGTGATTGAACCTCGCAATTTTGAGCGCCAGAATATTTATCAAAGCAGAAACCCGCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCTCATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACACATGAGGGTCTTTTGAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCTTGTTTGAGTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAAACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATCGTTGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATTCGGACAGACAAAACAACTCCAAATGATTTCAATACTTATAAGAAGGTAATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTACCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGTGA 2049 41.14 MIVSMDLNASPVPEDDEETFERHEEVYIAPEEHIVTGVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICWMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTSDLNKEGIKYVKIPCKGRDSVPDNKSVNTFVYEVIQFISRQKQQSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYTFYHERKPDAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAALLNENHDDGAQVMTNDDVLGDEIPEDQERGLKQFCYQMLKLNPGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQVEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMATNYVSVIERPFYERWKMLEKEVIEPRNFERQNIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSQVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRR* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15297575 15307765 + CsaV3_4G025970.1 Csa04g01589 527199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01589 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Csa04g01589 682 PANTHER MRNA-CAPPING ENZYME 3 682 - -
Csa04g01589 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 265 IPR020422 GO:0006470|GO:0008138
Csa04g01589 682 MobiDBLite consensus disorder prediction 44 85 - -
Csa04g01589 682 CDD Adenylation_mRNA_capping 325 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Csa04g01589 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Csa04g01589 682 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 682 - -
Csa04g01589 682 SMART dsp_5 18 261 IPR020422 GO:0006470|GO:0008138
Csa04g01589 682 CDD RNA_5'-triphosphatase 89 256 - -
Csa04g01589 682 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g01589 682 SUPERFAMILY Nucleic acid-binding proteins 555 667 IPR012340 -
Csa04g01589 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 277 IPR029021 -
Csa04g01589 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 253 IPR000387 GO:0016311|GO:0016791
Csa04g01589 682 MobiDBLite consensus disorder prediction 278 306 - -
Csa04g01589 682 Gene3D Protein tyrosine phosphatase superfamily 82 295 IPR029021 -
Csa04g01589 682 Gene3D DNA ligase/mRNA capping enzyme 313 550 - -
Csa04g01589 682 Gene3D - 551 659 IPR012340 -
Csa04g01589 682 MobiDBLite consensus disorder prediction 44 66 - -
Csa04g01589 682 Pfam mRNA capping enzyme, C-terminal domain 556 650 IPR013846 -
Csa04g01589 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Csa04g01589 682 Pfam Dual specificity phosphatase, catalytic domain 138 259 IPR000340 GO:0008138|GO:0016311
Csa04g01589 682 PIRSF mRNA_capping_HCE 74 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01589 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] - csv:101209960 1369.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01589 Csa_Chr04 FPKM 7.726769 8.531608 12.895015 12.282586 6.503896 5.938181 7.393268 0.640939 0.537977 0.525701