Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01602 ATGGCCACCGCCGCCGCAACCTCCTCCTTCCTCGGTACACGCCTCGCCGAAATAGTCCCCAGTTCTGGCAGAGTCCAAGCCCGGTTCGGCTTTGGAAAGAAAAAGAGTCCGCCGAAGAAATCGCCGTCGTCTAAGGTGATTTCCGACCGGCCCCTGTGGTTTCCAGGAGCCAAGGCCCCGGAATGGCTGGACGGAAGCTTGGTAGGGGACTATGGATTTGATCCATTTGGGTTGGGGAAACCGGCCGAGTATTTGCAGTATGATTTGGACTCGTTGGATCAAAATTTGGCCAAGAATGTGGCCGGAGATATAATTGGGACAAGATTTGAGAGCGCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTATTTGGATTGCAGAGATTCCGTGAGTGTGAGCTTATTCATGGACGGTGGGCAATGCTGGCTACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGGAAAAGTAGAATTAGTGGAAGGTTCATCGTACCTAGGCCAACCACTTCCCTTCTCCATCACTACACTAATCTGGATCGAAGTTCTAGTGATCGGTTACATTGAGTTCCAAAGGAATGCGGAGCTGGACCCGGAGAAAAGGTTGTACCCAGGAGGCAAGTTTTTCGACCCTCTGGGGTTGGCTGAGGACCCAGAAAAGAAAGCAGTGCTACAATTGGCTGAGATCAAGCATGCTCGCCTAGCCATGGTTGCGTTCCTTGGGTTTGCGGTTCAAGCTGCTGTGACTGGCAAAGGTCCACTCAACAACTGGGCTACCCATCTCAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTAA 855 52.16 MATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15434949 15436700 + CsaV3_4G026100.1 Csa04g01602 527212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01602 284 Pfam Chlorophyll A-B binding protein 59 255 IPR022796 -
Csa04g01602 284 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 284 IPR001344 GO:0009765|GO:0016020
Csa04g01602 284 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 2 284 - -
Csa04g01602 284 Gene3D Chlorophyll a/b binding protein domain 53 284 - -
Csa04g01602 284 SUPERFAMILY Chlorophyll a-b binding protein 47 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01602 Csa-Chr4:15434949 Csa05g01755 Csa-Chr5:20901153 3.26E-39 dispersed
Csa06g00534 Csa-Chr6:4530953 Csa04g01602 Csa-Chr4:15434949 5.17E-30 dispersed
Csa04g01602 Csa-Chr4:15434949 Csa01g00241 Csa-Chr1:1525225 1.00E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01602 K08915 - csv:101208740 551.592