Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01618 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAATGGAACCCTTAAGCGCCTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCATAACATGTCCTCCTCTTCCTTACGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGTCTCCGTAAGTTTTGTATTAATCTTCAGGAGGTCATTTTGGGAACCAAACTTTCCATTCTCTTCCCCGCGATTCCTCTCGCTATTGTCGCTCAGAATTTTGGCTTTGGAAGACCTTGGATTTTTGCATTGAGCTTGCTGGGCCTTACGCCATTGGCTGAACGTGTCAGCTTCCTAACCGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATATTAGCACTGACACAAAGGAAGATAGACGTGGTGAAGTATTCTCTATTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACTTCTCTCTTTTGTGGTGGAATTGCTAATATTAGACGGGAACAAAACTATGACAGAAGGCAAGCTGATGTCAACTCCCTCATGTTGATGCTATCTTTACTGTGCCACCTATTGCCTTTACTCTTTGGCTACGCTGCCGCCTCTGCCTCCACGGCCGCCGCCTCGACCCTCCATCTGTCCAGAGCTAGCAGCATTGTAATGCTCACTGCTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTGTTTGAAGCTGAGGAAGGTGAAGACGATGACGTTCCAGGAGAAGAGGCAGTGATCGGATTCTGGAGTGCATTTGCATGGCTTGTTGGAATGACACTCGTTATTGCTTTGCTTTCCGAGTACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCTGTGAGTTTCCTTAGCATAATCTTGCTCCCTATTGTTGGAAATGCCGCCGAACACGCGGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTGGGGGTTGCCCTGGGATCTGCAACACAAATTGCACTATTTGTGATTCCAATGTGTGTGATAGTAGCTTGGACAATGGGAGTGGACATGGACCTAAATTTCAACCTAATGGAAACAGGGTCACTTGGATTAGCAATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCATTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATAACAATGCTCCCAACTTGGGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1344 44.79 MASQTEPWLMENGTLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKIQFGCLRKFCINLQEVILGTKLSILFPAIPLAIVAQNFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASASTAAASTLHLSRASSIVMLTAYIAYLVFQLWTHRQLFEAEEGEDDDVPGEEAVIGFWSAFAWLVGMTLVIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPMCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNNNAPNLGLQSSNQAIFRA* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15535808 15540192 - CsaV3_4G026260.1 Csa04g01618 527228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01618 447 Gene3D - 122 272 IPR044880 -
Csa04g01618 447 Gene3D - 273 422 IPR044880 -
Csa04g01618 447 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 434 - -
Csa04g01618 447 TIGRFAM caca2: calcium/proton exchanger 58 421 - -
Csa04g01618 447 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016021|GO:0055085
Csa04g01618 447 Pfam Sodium/calcium exchanger protein 278 419 IPR004837 GO:0016021|GO:0055085
Csa04g01618 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 434 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa04g01618 447 TIGRFAM cax: calcium/proton exchanger 76 421 IPR004798 GO:0006816|GO:0015369
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03075 Csa04g01618 CCT
Csa03g03075 Csa04g01618 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01618 Csa-Chr4:15535808 Csa06g00979 Csa-Chr6:7944528 4.32E-121 dispersed
Csa01g02509 Csa-Chr1:22143541 Csa04g01618 Csa-Chr4:15535808 2.58E-146 transposed
Csa03g03075 Csa-Chr3:28931882 Csa04g01618 Csa-Chr4:15535808 1.30E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01618 K07300 - csv:101213857 818.15