Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01622 ATGGAAGATTTTTGCGATCTCCGCCGTGCTGTTTTTCATCGAATCGGCGTTAATGCGGAGGCGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACTGGAGACGAAGGAATTGCTGGCGATTAGAGCGGCTTTGGATAAGAATTTCTCGGAGATGAAACAGAATAGAATGCTTTGGATTTCGGTGGCCGAAAAGATGAAGGCTAAAGGCTTTAATCGAAGCGACGAGCAGTGTAAATGTAAATGGAAAAATCTCGTCACTCGTTATAAGGGTTGTGAAACTATGGATCCCAAAGCTCTAAAGCATCAATTTCCGTTTTACGACGACCTTCATACAATTTTTACTGCAAGGATGCAAAAGAATTGGTGGGTCGAAGCCGAAAACCGATCTGGAGGCTCGAAAAGGAAACCAAACGAGGATCCCAATGGTGATAGGGAATTAGAAAACGAAGAAAAAACAAAAACGAAAAATGGCACAAAAAAGAGGAAATGGAAAAGGGATAATCCTGAAGAACATGAGAGGAATTTGAAGGAAATATTGAAGGATTTTGTGAAAAGAGAGATGGAAATGGAGAGGGAATGGAGAGAAGCATTTAGGGTTAGAGAAGAAGAGAGAAGGTTAAAAGAGGAAGAATGGAGAATGAAAATGGAAGGCATTGAGAGAGAGAAAATGATGATGGAGATTTTATGGAGAGAAAGTGAGGACAAAAGAAGGGAAAGAGAAGAAGCAAGAGCTCAGAAAACAGATGCTTTGATCTCTGCTTTGTTGACCAACCTCACGTAA 780 41.92 MEDFCDLRRAVFHRIGVNAEAAGDRFPPWSVLETKELLAIRAALDKNFSEMKQNRMLWISVAEKMKAKGFNRSDEQCKCKWKNLVTRYKGCETMDPKALKHQFPFYDDLHTIFTARMQKNWWVEAENRSGGSKRKPNEDPNGDRELENEEKTKTKNGTKKRKWKRDNPEEHERNLKEILKDFVKREMEMEREWREAFRVREEERRLKEEEWRMKMEGIEREKMMMEILWRESEDKRREREEARAQKTDALISALLTNLT* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15600258 15604332 + CsaV3_4G026300.1 Csa04g01622 527232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01622 259 MobiDBLite consensus disorder prediction 126 170 - -
Csa04g01622 259 MobiDBLite consensus disorder prediction 128 170 - -
Csa04g01622 259 PANTHER - 1 259 - -
Csa04g01622 259 CDD GT1 29 92 - -
Csa04g01622 259 Gene3D - 29 90 - -
Csa04g01622 259 Pfam Myb/SANT-like DNA-binding domain 28 111 IPR044822 -
Csa04g01622 259 PANTHER - 1 259 - -
Csa04g01622 259 ProSiteProfiles Myb-like domain profile. 28 85 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03064 Csa04g01622 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00690 Csa-Chr4:4691367 Csa04g01622 Csa-Chr4:15600258 1.22E-23 dispersed
Csa01g00066 Csa-Chr1:378802 Csa04g01622 Csa-Chr4:15600258 5.38E-07 transposed
Csa03g03064 Csa-Chr3:28871011 Csa04g01622 Csa-Chr4:15600258 5.27E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31572 PF13837 Myb_DNA-bind_4 1.70E-18 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01622 - - csv:101218250 466.848