Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01643 ATGGCCACAAGCGTATCACACTCTCCCGATTTCCGCCCTGAAGTTTCCGTTACGCCGCCGACCCACGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGCTCAATCGCGGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAGGCCTTAGGTGGTGGATCGTCAACAGTCCGACAAGCCCTCGGCTCGATTCTGAAAGTGGAAGGCCCGGCTGGGCTTTACCGTGGAATCGGAGCAATGGGTTTAGGCGCAGGACCTGCACACGCCGTCTACTTCTCAGTATACGAGTTTGCGAAAGAGGGGTTTTCAATGGGGAATAAGAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGGTGACGAGCGACGCCGTGCTAACGCCGATGGATGTAGTGAAACAAAGGCTGCAGTTGAAGAGTAGTCCTTATAAAGGAGTGAGGGACTGTGTGAAGAGGATTTTGGTTGAGGAAGGGATTGGGGCGTTGTATGCTTCCTATCGGACGACGGTTGTGATGAATGCGCCATATACGGCGGTGTATTTTGCGACTTATGAAGCTGCTAAAAGGGGATTGAAGGAGGTGTCACCGGGAAGTGATGAAGATGAGAGGCTGATTGTTCATGCTACGGCCGGTGCGGCAGCTGGGTCTCTTGCTGCAGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGTCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGGTGTGTGGTGAAGAAGGATGGCTACAATGGGCTGATGAAAGGATGGATTCCAAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTACGAGGCTTCAAAATCCTTCTTTCAACATCTCCACAATCACAACAATTAG 936 52.03 MATSVSHSPDFRPEVSVTPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFAKEGFSMGNKNNPLAHAIAGVCATVTSDAVLTPMDVVKQRLQLKSSPYKGVRDCVKRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSPGSDEDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYNGLMKGWIPRMMFHAPAAAICWSTYEASKSFFQHLHNHNN* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15766687 15769623 + CsaV3_4G026510.1 Csa04g01643 527253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01643 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 109 IPR018108 -
Csa04g01643 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
Csa04g01643 311 SUPERFAMILY Mitochondrial carrier 23 297 IPR023395 -
Csa04g01643 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
Csa04g01643 311 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085
Csa04g01643 311 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Csa04g01643 311 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Csa04g01643 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Csa04g01643 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Csa04g01643 311 PANTHER MITOFERRIN-1-RELATED 2 310 - -
Csa04g01643 311 PANTHER MITOFERRIN-LIKE 2 310 - -
Csa04g01643 311 Pfam Mitochondrial carrier protein 26 111 IPR018108 -
Csa04g01643 311 Pfam Mitochondrial carrier protein 116 202 IPR018108 -
Csa04g01643 311 Pfam Mitochondrial carrier protein 213 304 IPR018108 -
Csa04g01643 311 Gene3D Mitochondrial carrier domain 115 311 IPR023395 -
Csa04g01643 311 Gene3D Mitochondrial carrier domain 11 114 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01643 Csa-Chr4:15766687 Csa06g01392 Csa-Chr6:11913493 4.43E-154 dispersed
Csa04g01643 Csa-Chr4:15766687 Csa06g01877 Csa-Chr6:16928041 3.91E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01643 K15113 - csv:101210464 618.616