Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01662 ATGTTGTTTGATTTTAGAGGAAAAACATCAAGAAAGAGGCGAAATGGGTATGTTTCAGTAGTGGACACTCTAAACAAGTGGAAGAAGTTGAATAATCAATTGGAGGATTTGGCTAAAGATGGAGGAGTAGAGGAAACTCGTAAAGTTCCAGCTAAGGGCTCCAAGAAAGGTTGCATGAGAGGGAAAGGAGGACCTCAGAATTCAGATTGCAATTTTAGAGGTGTTAGACAGAGGACATGGGGAAAATGGGTAGCTGAAATTAGAGAGCCAATTGCAAGTAATAATAATACCCGTTTGAAGAAGAAAGGCACTCGTTTATGGCTTGGCACTTTCTCCACTGCTCACCAGGCAGCTCATGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCGTTCGCTCGTCTTAATTTTCCTGATTCTTCTTCTCCTCTTATGAAACCATTAACGTCAGAGCATTCTGATACGATATCTCCTGTTGCTTCTTCCTCCTCTTCTTCTTCGTTCTTTAATGGAGTACCTGCAGAGAAAATGAAGGACTGTTATTCAATGGAAAAGCAAGAGAATTGTGAGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGAAAGAAGTAGAGTCAATTATACAGATATTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAGATCAGAAGGAAATATGAAGGAAGGATTAGCTGATGTTCTAAGAAGCCATGATCAGAATAGCCCTTCTGAGCTTTGTTTTAAATTTGAAACTATGAATACAAAGGGCTGCAATGACTTGAATGGATGCAATCAGTATGTGCTACAGAAGCTTCAGAGTGATCCATATGCAAGAACTTACTGGATTCCAGCCGGGTGGGAGATCGGCGATCTCGGGTCTGCGACGGTGATGGAAGCAAAGCCAATGGAGATTGAGAGCTACGGAGACTGTATGGCCTTCAACCGTGATCTGGGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGTGACCAGAGAGTTGATGATTGCAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA 1113 41.78 MLFDFRGKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGGVEETRKVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNNTRLKKKGTRLWLGTFSTAHQAAHAYDEAAKAMYGPFARLNFPDSSSPLMKPLTSEHSDTISPVASSSSSSSFFNGVPAEKMKDCYSMEKQENCEYESMEELKVKVEETERSRVNYTDIKPNSFYDSNIGNRSEGNMKEGLADVLRSHDQNSPSELCFKFETMNTKGCNDLNGCNQYVLQKLQSDPYARTYWIPAGWEIGDLGSATVMEAKPMEIESYGDCMAFNRDLGLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15924998 15926110 + CsaV3_4G026790.1 Csa04g01662 527272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01662 370 Gene3D AP2/ERF domain 71 139 IPR036955 GO:0003700|GO:0006355
Csa04g01662 370 Coils Coil 194 214 - -
Csa04g01662 370 Pfam AP2 domain 70 130 IPR001471 GO:0003700|GO:0006355
Csa04g01662 370 MobiDBLite consensus disorder prediction 46 72 - -
Csa04g01662 370 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Csa04g01662 370 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Csa04g01662 370 ProSiteProfiles AP2/ERF domain profile. 71 138 IPR001471 GO:0003700|GO:0006355
Csa04g01662 370 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 276 - -
Csa04g01662 370 SUPERFAMILY DNA-binding domain 71 140 IPR016177 GO:0003677
Csa04g01662 370 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 276 - -
Csa04g01662 370 CDD AP2 70 140 IPR001471 GO:0003700|GO:0006355
Csa04g01662 370 SMART rav1_2 71 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02097 Csa-Chr2:19060771 Csa04g01662 Csa-Chr4:15924998 2.06E-34 dispersed
Csa03g03619 Csa-Chr3:32245587 Csa04g01662 Csa-Chr4:15924998 1.33E-30 dispersed
Csa03g04249 Csa-Chr3:37209320 Csa04g01662 Csa-Chr4:15924998 3.46E-33 dispersed
Csa04g01662 Csa-Chr4:15924998 Csa06g01061 Csa-Chr6:8697980 5.58E-37 dispersed
Csa04g01662 Csa-Chr4:15924998 Csa04g01665 Csa-Chr4:15964227 0 proximal
Csa04g01662 Csa-Chr4:15924998 Csa06g00201 Csa-Chr6:1371453 1.17E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31575 PF00847 AP2 1.50E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01662 - K09286 csv:116403565 729.554