Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01662 | ATGTTGTTTGATTTTAGAGGAAAAACATCAAGAAAGAGGCGAAATGGGTATGTTTCAGTAGTGGACACTCTAAACAAGTGGAAGAAGTTGAATAATCAATTGGAGGATTTGGCTAAAGATGGAGGAGTAGAGGAAACTCGTAAAGTTCCAGCTAAGGGCTCCAAGAAAGGTTGCATGAGAGGGAAAGGAGGACCTCAGAATTCAGATTGCAATTTTAGAGGTGTTAGACAGAGGACATGGGGAAAATGGGTAGCTGAAATTAGAGAGCCAATTGCAAGTAATAATAATACCCGTTTGAAGAAGAAAGGCACTCGTTTATGGCTTGGCACTTTCTCCACTGCTCACCAGGCAGCTCATGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCGTTCGCTCGTCTTAATTTTCCTGATTCTTCTTCTCCTCTTATGAAACCATTAACGTCAGAGCATTCTGATACGATATCTCCTGTTGCTTCTTCCTCCTCTTCTTCTTCGTTCTTTAATGGAGTACCTGCAGAGAAAATGAAGGACTGTTATTCAATGGAAAAGCAAGAGAATTGTGAGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGAAAGAAGTAGAGTCAATTATACAGATATTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAGATCAGAAGGAAATATGAAGGAAGGATTAGCTGATGTTCTAAGAAGCCATGATCAGAATAGCCCTTCTGAGCTTTGTTTTAAATTTGAAACTATGAATACAAAGGGCTGCAATGACTTGAATGGATGCAATCAGTATGTGCTACAGAAGCTTCAGAGTGATCCATATGCAAGAACTTACTGGATTCCAGCCGGGTGGGAGATCGGCGATCTCGGGTCTGCGACGGTGATGGAAGCAAAGCCAATGGAGATTGAGAGCTACGGAGACTGTATGGCCTTCAACCGTGATCTGGGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGTGACCAGAGAGTTGATGATTGCAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA | 1113 | 41.78 | MLFDFRGKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGGVEETRKVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNNTRLKKKGTRLWLGTFSTAHQAAHAYDEAAKAMYGPFARLNFPDSSSPLMKPLTSEHSDTISPVASSSSSSSFFNGVPAEKMKDCYSMEKQENCEYESMEELKVKVEETERSRVNYTDIKPNSFYDSNIGNRSEGNMKEGLADVLRSHDQNSPSELCFKFETMNTKGCNDLNGCNQYVLQKLQSDPYARTYWIPAGWEIGDLGSATVMEAKPMEIESYGDCMAFNRDLGLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG* | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15924998 | 15926110 | + | CsaV3_4G026790.1 | Csa04g01662 | 527272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01662 | 370 | Gene3D | AP2/ERF domain | 71 | 139 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | Coils | Coil | 194 | 214 | - | - | |
Csa04g01662 | 370 | Pfam | AP2 domain | 70 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
Csa04g01662 | 370 | PRINTS | Ethylene responsive element binding protein signature | 104 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | PRINTS | Ethylene responsive element binding protein signature | 72 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | ProSiteProfiles | AP2/ERF domain profile. | 71 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 276 | - | - | |
Csa04g01662 | 370 | SUPERFAMILY | DNA-binding domain | 71 | 140 | IPR016177 | GO:0003677 | |
Csa04g01662 | 370 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 276 | - | - | |
Csa04g01662 | 370 | CDD | AP2 | 70 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g01662 | 370 | SMART | rav1_2 | 71 | 144 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02097 | Csa-Chr2:19060771 | Csa04g01662 | Csa-Chr4:15924998 | 2.06E-34 | dispersed | |
Csa03g03619 | Csa-Chr3:32245587 | Csa04g01662 | Csa-Chr4:15924998 | 1.33E-30 | dispersed | |
Csa03g04249 | Csa-Chr3:37209320 | Csa04g01662 | Csa-Chr4:15924998 | 3.46E-33 | dispersed | |
Csa04g01662 | Csa-Chr4:15924998 | Csa06g01061 | Csa-Chr6:8697980 | 5.58E-37 | dispersed | |
Csa04g01662 | Csa-Chr4:15924998 | Csa04g01665 | Csa-Chr4:15964227 | 0 | proximal | |
Csa04g01662 | Csa-Chr4:15924998 | Csa06g00201 | Csa-Chr6:1371453 | 1.17E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31575 | PF00847 | AP2 | 1.50E-14 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01662 | - | K09286 | csv:116403565 | 729.554 |