Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01665 GGAAAAACATCAAGAAAGAGGCGAAATGGGTATGTTTCAGTAGTGGACACTCTAAACAAGTGGAAGAAGTTGAATAATCAATTGGAGGATTTGGCTAAAGATGGAGGAGTAGAGGAAACTCGTAAAGTTCCAGCTAAGGGCTCCAAGAAAGGTTGCATGAGAGGGAAAGGAGGACCTCAGAATTCAGATTGCAATTTTAGAGGTGTTAGACAGAGGACATGGGGAAAATGGGTAGCTGAAATTAGAGAGCCAATTGCAAGTAATAATAATACCCGTTTGAAGAAGAAAGGCACTCGTTTATGGCTTGGCACTTTCTCCACTGCTCACCAGGCAGCTCATGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCGTTCGCTCGTCTTAATTTTCCTGATTCTTCTTCTCCTCTTATGAAACCATTAACGTCAGAGCATTCTGATACGATATCTCCTGTTGCTTCTTCCTCCTCTTCTTCTTCGTTCTTTAATGGAGTACCTGCAGAGAAAATGAAGGACTGTTATTCAATGGAAAAGCAAGAGAATTGTGAGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGAAAGAAGTAGAGTCAATTATACAGATATTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAGATCAGAAGGAAATATGAAGGAAGGATTAGCTGATGTTCTAAGAAGCCATGATCAGAATAGCCCTTCTGAGCTTTGTTTTAAATTTGAAACTATGAATACAAAGGGCTGCAATGACTTGAATGGATGCAATCAGTATGTGCTACAGAAGCTTCAGAGTGATCCATATGCAAGAACTTACTGGATTCCAGCCGGGTGGGAGATCGGCGATCTCGGGTCTGCGACGGTGATGGAAGCAAAGCCAATGGAGATTGAGAGCTACGGAGACTGTATGGCCTTCAACCGTGATCTGGGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGTGACCAGAGAGTTGATGATTGCAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA 1095 42.1 GKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGGVEETRKVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNNTRLKKKGTRLWLGTFSTAHQAAHAYDEAAKAMYGPFARLNFPDSSSPLMKPLTSEHSDTISPVASSSSSSSFFNGVPAEKMKDCYSMEKQENCEYESMEELKVKVEETERSRVNYTDIKPNSFYDSNIGNRSEGNMKEGLADVLRSHDQNSPSELCFKFETMNTKGCNDLNGCNQYVLQKLQSDPYARTYWIPAGWEIGDLGSATVMEAKPMEIESYGDCMAFNRDLGLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15964227 15965322 + CsaV3_4G026910.1 Csa04g01665 527275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01665 364 Gene3D AP2/ERF domain 65 133 IPR036955 GO:0003700|GO:0006355
Csa04g01665 364 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Csa04g01665 364 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Csa04g01665 364 ProSiteProfiles AP2/ERF domain profile. 65 132 IPR001471 GO:0003700|GO:0006355
Csa04g01665 364 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 270 - -
Csa04g01665 364 Coils Coil 188 208 - -
Csa04g01665 364 MobiDBLite consensus disorder prediction 35 60 - -
Csa04g01665 364 CDD AP2 64 134 IPR001471 GO:0003700|GO:0006355
Csa04g01665 364 SUPERFAMILY DNA-binding domain 65 134 IPR016177 GO:0003677
Csa04g01665 364 SMART rav1_2 65 138 IPR001471 GO:0003700|GO:0006355
Csa04g01665 364 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 270 - -
Csa04g01665 364 Pfam AP2 domain 64 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01665 Csa-Chr4:15964227 Csa06g01061 Csa-Chr6:8697980 4.57E-37 dispersed
Csa04g01662 Csa-Chr4:15924998 Csa04g01665 Csa-Chr4:15964227 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31576 PF00847 AP2 1.40E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01665 - K09286 csv:116403565 729.554