Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01680 TTTTATATGTTTTATTGGCCGGTTATCTCTCCTTTCCATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTTCCCAACTGGTTTGCGCCAGAAGTGCGCAAGCTGTTGTCAAAGATATTAGATCCTAACCCAAATACCAGGATATCAATTGCCAAAATAATGGGAAGTTCTTGGTTAAGGAGGGAGTTGAATGTGAAACCACAAGTTAATACAGCAGAGGAAGTGAATGAAGGGGATCCTTTGGATCTTGATGCAGTTTTTGTGTCGACAGCCGAGGACAGAAACTCTGTTAAAGATCAGAAGCCAGAAATGGAAAAGCCATTGAATTTAAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTATTCGAGGAGGCTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCGTGATCATCTCAAAACTGCAAGACATTGCAAAGTGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCGGTATGTATTGATGCAGAGATTTTTGAAGTTACCCCATCATTCCATATAGTGGAAATGAAGAAGTCAAACGGAGATACATTGGAATATCGGAAGATAATGAAAGATAACATAAGACCTGCCCTGAAGGACGTTGTGTGGACCTGGCAAGGTGAACACGAACAGCAACGGAGACAGCTATTACCAGCAGAACAACAACAACAAGGACATGAAGCTCAACAACAATCTTCTAGTGATTCATTATAA 813 39.73 FYMFYWPVISPFHDPNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRISIAKIMGSSWLRRELNVKPQVNTAEEVNEGDPLDLDAVFVSTAEDRNSVKDQKPEMEKPLNLNAFDIISLSSGFDLSGLFEEADLKKEVRFTSNKPASVIISKLQDIAKCLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDNIRPALKDVVWTWQGEHEQQRRQLLPAEQQQQGHEAQQQSSSDSL* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16146628 16148041 + CsaV3_4G027060.1 Csa04g01680 527290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01680 270 MobiDBLite consensus disorder prediction 246 270 - -
Csa04g01680 270 PANTHER - 11 251 - -
Csa04g01680 270 Gene3D Kinase associated domain 1, KA1 111 237 - -
Csa04g01680 270 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 11 251 - -
Csa04g01680 270 SUPERFAMILY Protein kinase-like (PK-like) 9 75 IPR011009 -
Csa04g01680 270 ProSiteProfiles NAF domain profile. 112 136 IPR018451 GO:0007165
Csa04g01680 270 Gene3D Transferase(Phosphotransferase) domain 1 2 89 - -
Csa04g01680 270 Pfam NAF domain 114 172 IPR004041 GO:0007165
Csa04g01680 270 CDD CIPK_C 118 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01680 Csa-Chr4:16146628 Csa06g01609 Csa-Chr6:13847653 7.73E-87 dispersed
Csa04g01680 Csa-Chr4:16146628 Csa01g02318 Csa-Chr1:20282952 6.08E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01680 K07198 - csv:116406388 493.812