Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01681 ATGGCGGTTTCCCCCCACTCTTTCCCACCGCGTAAACGCCGCCCCTCCGCCGCTGCCTTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCCAATCCCTCCTCTCCCTCTCCCAGGAAATCTCTTCCACTAAACCCCTCAAATTCCTTCTCAACCGCTACTCCCTTTCCATGATCCGCAAATCCTTATTACTCGAAATTATCCTCCACGACCTCCTCCGCCGTCACCCGGTTCTCTCCCTCTCCCCCTCCGCTTCCCTCTGTCTCGAAGAAATGTACATCCTTTTACAAAGAATCAAAACCCTCCTCGAAGATTGTTCTAACGGAAGCAAGATCTGGCTACTCACTCAAAACCAATCCATCGCTAACAGTTTCCACGAACTCACTTTGGATTTATCCACTCTACTCGATATCTTCCCTGTGAAAGACGCTGCTTTAACCCAAGACGTTGAGGAATTGTTTTACCTCTTGAGAAATCAAACCTCTGAATCCAGCGTGTTCCTCGATCCAAGAGATGAAGCTCTCCGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATTGTTCCGGATTATTCCGAATTGTTAGAGATTTTTACCATGATTGATATTCGTGATTCCTCTAGCTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACCGATGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGGTTAGTTCGTTACGCGAAATGCGTATTGTATGGAGCGTCGACGACGGCGGAATACGGTTTCCAACGGAAAGATTCGATTTCCGATATAGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCGGTTGTCGTGGCAACAGGACATACGTATGATCGTGCGGCGATTACGCTTTGGATTGAATCAGGACACAACACGTGTCCAAAGACAGGTCAGACCCTGGCCCACACGAACCTAATACCGAACCGGGCATTGAAAAATTTGATCGCGATGTGGTGCCGTCAAGAAAGAATTCCGTTTGATATAACGGAAAGCAACAAGGATAGAGTCAACGACGTTACGTTAAATAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGTTGACTCTTCTGTGAACGATGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGCAGCCGTGGCTATATCGCTCTAGCCGGAGCTCTACCTCTACTCGTCCGATATCTCAACTCCGAAAACCCGATTCTCCAAGTGAACGCCGTCACGACGGTGCTCAACCTCTCCATTTTTGAATCGAACAAATCGTTGATAATGGAGACCGAGGGTGCGTTGATCGGAGTTATCGAGGTACTCCGGTCCGGCGCCACTTGGGAAGCGAAAGGAAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACAGGCGGAGATTGGGGAGGAAGACACGTGTCATAAGGGGACTGCTTGATTTGGCGAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTTACGATTTTGACATTAGCCGGCGTTAGGGAGACGGTCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGTTATTTGATGAACAGCTTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGGTTTTATCTGATTAAGAAATTGGGGGTTGTGTTGAGAGAGGGCTCCGATAGGTCCAGAGAGAGCGCTGCGGCGGCCCTGGTGACAATGTGCCGGCAAGGTGGATCAGAGATGGTGACGGAGTTGGCGTCGATGGCAGGAATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGGAAATGGCGGCGCGGGAGGAGATTCGATGACAGTTACATCGTCGAGAATGGGCGGCGAGTCAACCACATTTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAG 2070 50.19 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLNRYSLSMIRKSLLLEIILHDLLRRHPVLSLSPSASLCLEEMYILLQRIKTLLEDCSNGSKIWLLTQNQSIANSFHELTLDLSTLLDIFPVKDAALTQDVEELFYLLRNQTSESSVFLDPRDEALRFRVLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTAEYGFQRKDSISDIAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESNKDRVNDVTLNKAALEAMRMTATFLVNKLATSVDSSVNDVVYELRVLAKTDPGSRGYIALAGALPLLVRYLNSENPILQVNAVTTVLNLSIFESNKSLIMETEGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGVRETVGRLIEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRSRESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGAGGDSMTVTSSRMGGESTTFVSSSRGAIVHS* 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16225365 16228199 + CsaV3_4G027070.1 Csa04g01681 527291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01681 689 Coils Coil 209 236 - -
Csa04g01681 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 349 IPR013083 -
Csa04g01681 689 Gene3D - 369 649 IPR011989 -
Csa04g01681 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 664 - -
Csa04g01681 689 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Csa04g01681 689 CDD RING-Ubox_PUB 275 317 IPR045210 -
Csa04g01681 689 PANTHER U BOX DOMAIN-CONTAINING 11 664 - -
Csa04g01681 689 SUPERFAMILY ARM repeat 374 646 IPR016024 -
Csa04g01681 689 SUPERFAMILY RING/U-box 262 343 - -
Csa04g01681 689 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Csa04g01681 689 Gene3D - 59 141 IPR036537 GO:0007166
Csa04g01681 689 MobiDBLite consensus disorder prediction 667 689 - -
Csa04g01681 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Csa04g01681 689 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02298 Csa-Chr1:20078884 Csa04g01681 Csa-Chr4:16225365 5.00E-137 dispersed
Csa04g01681 Csa-Chr4:16225365 Csa06g00194 Csa-Chr6:1333768 1.52E-106 dispersed
Csa04g01681 Csa-Chr4:16225365 Csa01g00838 Csa-Chr1:5256821 1.49E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01681 - - csv:101205143 1297.72