Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01684 ATGGCACAATCGAATATTGGGTATGCTGAAACAGATCCTTCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCACGAAAACAGTATATAAAGGCTTCGATGAGGTTCTTGGAATTGAAGTGGCTTGGAACCAAGTCCATCTCAAAGATGTCTTCCATTCCCCTGAAGAACTACAACGCTTATACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACGACTCGATCATCCGATTCTACACTTATTGGATCGATACTCATCGCCGAACGTTCAACTTCATCACAGAAATGTTCACATCTGGCACCCTTAGAGAGTATCGACAAAAGTATCGAAACATCGACATCGAAGCAATCAAGAACTGGGCTCGTCAAATCCTACATGGTCTTGTTTATCTTCATGGTCATGATCCACCCATAATCCATAGAGACCTAAAGTGTGATAATGTATTCATCAATGGCCATCTTGGGCAAGTTAAGATTGGTGACCTTGGACTTGCAGCAATCCTTCATGATTCTCAACATGCTCATAGTGTCATAGGTACACCAGAGTTCATGGCACCAGAACTTTATGACGAGGAATATAATGAACTTGTGGATGTTTATTCGTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAATGCTTTAATCCTGCTCAGATATACAAAAAAGTCACTTCAGGAAAATTGCCAAATGCATTCTATGAGATCAAAGACTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGGTGTCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTTCCAACGCTAACAATGCCTCTCACAATGAAGAGTTGTTGTCTTCATCTTTATCTCCAGAGAAATCAATAATGGCAAGAAGAACAGATTTAGCCATTTCAGGATCAATCAATCCCAAGGATGATTCAATTTTCCTTAAAGTGCAGATCAAAGTGAAGAACGGTAAATCTAAGAACGTATATTTTGCATTCGACATCTTAAACGACACTACAATCGACGTTGCGACCGAGATGGTTAAAGAGTTGGAAATTATCAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAGAGAAGGAGATATCCTCATTGATTCCAGATTGGGAGGAATGGAAGTTACCAAAAATCCAACATCAAGATAGCTTCAACTATGAACAAGATCACGATGGCGACAACGATAACGACAATGACGATGACGACGAAAACTATGCAACACCACATCCTTTCTATTATTGCGGCTCTTCTCATGGCTCCTCCTCAGATTCTCTTCATGCTTTCTACTCTTCCCGTGAGAACCCCAATCATTATTTTGGAGGGATGAAGGACACTTCTAATACTACTGAGTGGTTTCGAGAGGATGATACAAGTTCTTGTTGCTCTCTCAATTCCTTCAATTACTCTGATTTAAGTTTTTACTCAAACAATGAAGATGAGTATGAATATGACTCAAATATCAAAGGAAGAGAGCCTCAATATGTCTCAACAACCAAACAACCTACAAGATTTTGCCCAACCATGAAGATAGACTCACACCATTTGAGGCACAAGGACAATAAAATTATCCCCAATCGAGAAGTATTCGAGAGTCGATCTCGATCAAATAACTCGCCTAGACTTACAAGGGTGAAATCGATGGTGAACCTTCGTAGTGAGACGTTGCACCGGTACTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACTGTGGGTGCAATGGAGAATATTGGATACCAAAAGCCATAG 1797 40.51 MAQSNIGYAETDPSGRYGRFREILGKGATKTVYKGFDEVLGIEVAWNQVHLKDVFHSPEELQRLYSEVHLLKNLNHDSIIRFYTYWIDTHRRTFNFITEMFTSGTLREYRQKYRNIDIEAIKNWARQILHGLVYLHGHDPPIIHRDLKCDNVFINGHLGQVKIGDLGLAAILHDSQHAHSVIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECFNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRVSARELLLDPFLAPSNANNASHNEELLSSSLSPEKSIMARRTDLAISGSINPKDDSIFLKVQIKVKNGKSKNVYFAFDILNDTTIDVATEMVKELEIISDWDPLEIAVMIEKEISSLIPDWEEWKLPKIQHQDSFNYEQDHDGDNDNDNDDDDENYATPHPFYYCGSSHGSSSDSLHAFYSSRENPNHYFGGMKDTSNTTEWFREDDTSSCCSLNSFNYSDLSFYSNNEDEYEYDSNIKGREPQYVSTTKQPTRFCPTMKIDSHHLRHKDNKIIPNREVFESRSRSNNSPRLTRVKSMVNLRSETLHRYLVEMLLKKRLFNTVGAMENIGYQKP* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16267499 16272821 - CsaV3_4G027100.1 Csa04g01684 527294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01684 598 Gene3D Transferase(Phosphotransferase) domain 1 101 282 - -
Csa04g01684 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Csa04g01684 598 SUPERFAMILY Protein kinase-like (PK-like) 20 277 IPR011009 -
Csa04g01684 598 CDD STKc_WNK 16 276 - -
Csa04g01684 598 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Csa04g01684 598 ProSiteProfiles Protein kinase domain profile. 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01684 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 3 598 - -
Csa04g01684 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 598 - -
Csa04g01684 598 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01684 598 MobiDBLite consensus disorder prediction 400 421 - -
Csa04g01684 598 SMART serkin_6 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01684 Csa-Chr4:16267499 Csa06g01613 Csa-Chr6:13870760 0 dispersed
Csa04g01684 Csa-Chr4:16267499 Csa03g00442 Csa-Chr3:3747292 2.77E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78163 PF00069 Pkinase 1.00E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01684 K08867 - csv:101207665 1190.64