Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01700 ATGAAGGAAATTCGTGGTCTTGCATTTGCATTTGCGTTTGCATCTATATCTGTTTTCGTTTCCTTGTTCTTCGATGTTCATGTGGTTTTAGCACAAAATTACATCCCTCGGGATGTAATCCTCCTTGATTGTGGAGGACCTTCAACTGCTAACGACATCGACAACCGGAAATGGAACACCGATGACAAATCTAAGTTTGTTCCGGCGACAGGGGATAGCTCTGTATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTTAGTTCTAGTTTCACCTACAGCTTTCCTGTGGCTCCTAGTCGTTTATTTGTTCGTCTCTACTTTTACCCTTCTTCTTATGGTGGACTTGATGCATCTGATGCTCTTTTCTCTGTTTCCACTCAATCCTATACTCTTCTTAAGAACTTCAGCGCTTCACAAACGGCTGCAGCTTTGAATTATGCCTATATCATTAAGGAATACTCTATCCATGTTGATGATGATAGGTTGAACTTGACTTTCACTCCATCCTCCACTCATCCAAAGGCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATGGCTGATATTTATAGTGATACTTCTGGGAGTACCCTGATTGTTGGTCCATCTACTCCATTCATTGTGGACAATTCCACTGCACTTGAGAACGTCTTTCGGTTGAATGTCGGGGGGAATGATATTTCACCTTCTGATGATACCGGGATGTATAGGTCTTGGTTTGATGATACTCCATTCTTGTATGGGGCAGCACAGGGAGTGACGATGAGTACTGATCAAAACACAACGCTTAATTATCCGCCGGGCTTTCCTTCTTATGTTGCACCGGAGAATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATCTGAATTATAACTTGACATGGATTTTCCCTGTTGACTCTGGGTTCTTTTACCTTGTTAGGCTTCATTTTTGTGAGATTGCTGCAAATATCACAAAAGTCAACCAAAGGGTGTTCGACATTTTCCTTTATAATAAAACTGCTATGGATAGTGCTGATGTGATTGCCTGGTCTAAAAGTAATGATACTCCTTTCTACAAAGATTATGTGGTTTTTGTTCCTGCTAATGGAAATCCACAGCAGGATTTATGGCTTGAACTGCATCCAGACAAGACCATGCGTCCCAATTACTATGATGCAATCTTAAATGGAGTGGAGATATTCAAAATTAATGACTCGAGCGCTAATCTTGCTGGGCTAAATCCTATTCCTGCTCCAAAACAGGACATTATTGATCCATCATTAGCTAAGCCAGCTTCTCACGGTAAATCAAAGAATAATTCAGGGGTGATTGCTGGAGTTGTTTGTGGAGCAGTTGTTTTAGCTCTGATTATTGGTTTCTTTGTTTTTGCTAAACGTCGCCGTGGGCGTGGTAAAGATTCTAGTACTGTTGAGGGACCGTCGGGATGGCTCCCTCTTTCTCTCTATGGAAATTCCCATTCAGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCTAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGTCTGCTACAAGGGACTTTGATGAATCTTTACTACTTGGAGTTGGTGGTTTTGGCAAAGTTTACAAGGGAGAAATTGATGGTGGGACTACGAAAGTTGCCATCAAGCGAGGGAACCCTCTCTCTGAGCAAGGTGTCCATGAATTTCAAACAGAGATTGAAATGCTTTCTAAGCTTCGCCATCGCCACCTTGTTTCATTGATTGGCTACTGTGAAGAGAATTGTGAAATGATTCTTGTTTATGATTACATGGCTCATGGAACACTGCGAGAACATTTATACAAGACTCACAAGCCGCCATTGTCTTGGAGGCAAAGGCTCGAAATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACCGGTGCCAAGCATACGATTATTCATAGAGATGTGAAGACAACCAACATCCTTTTAGACGAAAAGTGGGTGGCAAAAGTATCTGATTTTGGGTTGTCAAAAACTGGTCCTACTTTGGATCACACACATGTTAGCACTGTAGTGAAAGGTAGTTTTGGATACTTGGATCCTGAATACTTTAGGCGACAACAATTGACCGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTCTTTGAAGTCCTATGTGCTCGGCCAGCCTTGAACCCAACACTCCCTAAGGAGCAAGTGAGTTTAGCTGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACACATTCCTTAAAGGGAAGATAGCATCAGAATGTCTCAAGAAGTTCGCAGAGACAGCAATGAAATGTGTATCTGATCAGGGAATTGACAGGCCATCGATGGGCGATGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAGGTAGGCAGTGGGATGGATGTGGAAGAAGGTCAACTGGATGTAGTTTACAAAGGAAAGAAGGATCCAGATGCTTCCCCCGGCATTGATGGAAACATAACCGACTCAAGAAGCACCGGAATCAGTATGAGCATTGGAAGCCGAAGTCTTGCCAGTGAAGATTCAGACGGGTTGACGCCGAGTGCTGTGTTCTCACAGATCATGAACCCAAAAGGACGTTAA 2694 43.24 MKEIRGLAFAFAFASISVFVSLFFDVHVVLAQNYIPRDVILLDCGGPSTANDIDNRKWNTDDKSKFVPATGDSSVSKAATQDPSVPDIPFMTARVFSSSFTYSFPVAPSRLFVRLYFYPSSYGGLDASDALFSVSTQSYTLLKNFSASQTAAALNYAYIIKEYSIHVDDDRLNLTFTPSSTHPKAYAFVNGIEIVSMADIYSDTSGSTLIVGPSTPFIVDNSTALENVFRLNVGGNDISPSDDTGMYRSWFDDTPFLYGAAQGVTMSTDQNTTLNYPPGFPSYVAPENVYSTARAMGPDNNVNLNYNLTWIFPVDSGFFYLVRLHFCEIAANITKVNQRVFDIFLYNKTAMDSADVIAWSKSNDTPFYKDYVVFVPANGNPQQDLWLELHPDKTMRPNYYDAILNGVEIFKINDSSANLAGLNPIPAPKQDIIDPSLAKPASHGKSKNNSGVIAGVVCGAVVLALIIGFFVFAKRRRGRGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKSATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDTFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKVGSGMDVEEGQLDVVYKGKKDPDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR* 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16396422 16399115 + CsaV3_4G027260.1 Csa04g01700 527310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01700 897 Gene3D - 38 198 - -
Csa04g01700 897 Gene3D - 224 413 - -
Csa04g01700 897 MobiDBLite consensus disorder prediction 843 897 - -
Csa04g01700 897 Gene3D Phosphorylase Kinase; domain 1 524 615 - -
Csa04g01700 897 CDD STKc_IRAK 545 811 - -
Csa04g01700 897 SMART serkin_6 539 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01700 897 Pfam Protein tyrosine and serine/threonine kinase 545 807 IPR001245 GO:0004672|GO:0006468
Csa04g01700 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 568 IPR017441 GO:0005524
Csa04g01700 897 Gene3D Transferase(Phosphotransferase) domain 1 616 831 - -
Csa04g01700 897 PANTHER OS07G0166700 PROTEIN 24 863 IPR045272 GO:0004714|GO:0006468
Csa04g01700 897 Pfam Malectin-like domain 42 412 IPR024788 -
Csa04g01700 897 PANTHER - 24 863 - -
Csa04g01700 897 MobiDBLite consensus disorder prediction 855 890 - -
Csa04g01700 897 ProSiteProfiles Protein kinase domain profile. 539 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01700 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Csa04g01700 897 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00299 Csa-Chr2:2059910 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa04g01022 Csa-Chr4:8013879 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa04g01024 Csa-Chr4:8019374 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa04g01700 Csa-Chr4:16396422 Csa06g03855 Csa-Chr6:30576449 0 dispersed
Csa05g03041 Csa-Chr5:30555104 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa05g03042 Csa-Chr5:30558594 Csa04g01700 Csa-Chr4:16396422 0 dispersed
Csa04g01700 Csa-Chr4:16396422 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78166 PF12819 Malectin_like 5.50E-41 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01700 - - csv:101211171 1787.7