Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01704 ATGAGGCTACAATCCTTTCTTGCAGCATCGTCTTTACTCTTACTCATTTATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCAGGAAGCTCTTTTGGATTTTATTTCATCGGTTCCCCATGGTCGAAAAATTAACTGGGATCCTTCTACCCCGGTCTGCACTACTTGGGTTGGCGTCACTTGCACTTCAGACCTCTCAAACGTGCTTGCTCTCAGGTTGCCTGCAATTGGACTGTATGGTCCAATCCCGGCCAATACTCTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTTTGTATCTTCAACGCAATAACTTTTCTGGTAAGGTACCTTCTTCCCTCTCTCCTAGCCTTACCTTCCTTGATCTATCCTTCAACTCTCTCACTGGAAACATTCCAAAATCGGTACAAAATTTAACACACCTCACTGGGCTGAACGTTCAAAACAACTCCCTGAATGGATCCATCCCTGATATTGGTCACCTAAGGCTTAAGCAATTGAACTTGAGCTACAACAAGCTTAGCGGTCCCATTCCTGCTTCACTGCAGTCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCACCTTTGAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCACCGCCCGCTTCGTTGCCCCCGCCAAAGAAAAAGAGTGAAAAAAAAATAAATATTGGAGCTATTGTTGCTATTGGCTTAGGTGGTGCTGCCGTGCTCTTCCTCCTTGTGGTGTTGATTGTTGTCTGCTGTATGAAAAAAAAAGATGGTGAAAGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGTGGGGTACAAGAGCCTGAGAAAAATAGGCTGGTTTTCTTTGAAGGCTGTTCTTACAATTTTGATCTTGAGGACTTGTTAAGGGCCTCTGCAGAAGTACTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAAGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGACGAGAAGCTTTTGGTTTACGACTATGCCATTGCTGGAAGCTTTTCGGCACTACTTCGTGGAAGTCGAGAAGGTGGGCGAGCACCACCAGACTGGGAAACAAGATTGAAGGTTTCACTGGGGTGTGCCAAAGGTCTTGCACATATTCATTCAGCAAGTGGGGGAAAATTCATCCACGGGAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGACTTTGGCTTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGCGTAGGTTATCGTGCTCCGGAGGTAATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTCATTTTGCTAGAGATGTTGACTGGAAAAGCGCCATCCCAATCGCCAGGCCGTGACGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTAGTAAGAGAAGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTACCGGATATGAGACCAACAATGGACGACGTTGTTAGGATGATCGAGGAAATTCGATCATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCTGGGGAAGGGGAAGGGGAAGGGGACGATGACTTGAATACTCAGACCATGTAA 1917 45.07 MRLQSFLAASSLLLLIYFLSFIAADLNSDQEALLDFISSVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAIGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFLYLQRNNFSGKVPSSLSPSLTFLDLSFNSLTGNIPKSVQNLTHLTGLNVQNNSLNGSIPDIGHLRLKQLNLSYNKLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPPPASLPPPKKKSEKKINIGAIVAIGLGGAAVLFLLVVLIVVCCMKKKDGESSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAIAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVILLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMDDVVRMIEEIRSLDSGTRPSSEDNKAGEGEGEGDDDLNTQTM* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16425507 16430530 - CsaV3_4G027300.1 Csa04g01704 527314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01704 638 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Csa04g01704 638 MobiDBLite consensus disorder prediction 289 310 - -
Csa04g01704 638 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01704 638 Gene3D Transferase(Phosphotransferase) domain 1 413 624 - -
Csa04g01704 638 PANTHER OS05G0588300 PROTEIN 9 621 - -
Csa04g01704 638 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Csa04g01704 638 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01704 638 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Csa04g01704 638 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Csa04g01704 638 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Csa04g01704 638 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Csa04g01704 638 SUPERFAMILY L domain-like 39 225 - -
Csa04g01704 638 MobiDBLite consensus disorder prediction 606 638 - -
Csa04g01704 638 MobiDBLite consensus disorder prediction 606 623 - -
Csa04g01704 638 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Csa04g01704 638 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Csa04g01704 638 PANTHER OS05G0480400 PROTEIN 9 621 - -
Csa04g01704 638 CDD STKc_IRAK 341 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01704 Csa-Chr4:16425507 Csa06g01121 Csa-Chr6:9313912 0 dispersed
Csa05g02059 Csa-Chr5:23897339 Csa04g01704 Csa-Chr4:16425507 7.06E-97 dispersed
Csa07g00952 Csa-Chr7:8359681 Csa04g01704 Csa-Chr4:16425507 5.23E-69 dispersed
Csa04g01704 Csa-Chr4:16425507 Csa05g00223 Csa-Chr5:1334228 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78167 PF00069 Pkinase 3.40E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01704 - - csv:101210437 1137.87