Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01709 ATGCCGTCGATGTGGAGGGATTGTGTGTGCGTGTTTCTGCTCTTGTGCTGTTCATCCATACTTCTTACTGGTGCTGCTCAAACAGAGCCATCTGATGTTAAAGCATTGCTAGCAGTTAAGAGGAGTCTAATTGATCCTATGGACCAGCTTATCAGTTGGAGTAAAGGAGATCCTTGCAAAGATAATTGGATTGGAGTAGTATGTTCTGGTGGAGCTGTCGGGAACTTACGTGTCAAAGAAATCCAGCTATTGAATAAAAACCTATCTGGCAATTTAGCTCCTGAGATCAGTCAATTGTCAGCGCTTGAGAAGTTAAATTTCATGTGGAATGACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATGGTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAGCTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTGTAAAACTCATCCGGTTCCAAATAGACGAGAATCGAATTTCAGGGCCTATCCCAAAATCATATGCTAACTTGGCCAGTCTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACATGCTTGTAGATAACAATAATTTGTCGGGTTCTCTGCCACCAGAACTTTCGACCATGCCAATGCTACTTATTCTGCAACTTGATAGCAACAACTTCGATGGGGAAATTCCAGCATCTTATGAAAATTTTCCTGAATTAGTGAAATTAAGTCTAAGGAATTGCAGTTTGAAGGGGCCGATTCCTAATTTTAGCAAGTTAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACTCATACCCCCTTACAACCTCTCTTCTAGAATGACAACAATAATTTTGTCAAACAACCAGCTGAATGGATCAATACCCAGAAGTTTCTCCAATCTCCCTATCCTCCAGAAACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGAAAATGTCCTTCGATTCAAGTGACCGACTTACACTCGATCTTCGGAACAATTCGTTTTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTTGGAGGGAATCCAATCTGCAAAATTTTGAGCGGACAAAACACTGACAAGTTCTGTAAGTCAAAAAATGTAGAGGATGGGCTTCATAGAAGTTCAAGGAGTTCCAGTAAAACATGTCCAGTTAGCAGTTGTCCAACTGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGTTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAAAGTCCAAGTTTTTCCTACTTTCCTCCATATGTGAATTCATTTGAAGCGTATCTGTCTAAGGAACTCAGTTTGGTGAAGCATCAATTGTTAATTGATTCGTACGATTGGGAGGGTTCTCGCTTGAGGATGTATCTGAAGATTTTTCCATCATTCGATAGTGGTACTCATAAATTGGATGTAAATGAGACATTTCTAATTACAGAGCAATTTATGTCGTGGAGTTTTACCCGTAATAACGTGTTTGGCCCATACGAGCTTCTCAACTTCACATTCCCTGACCATTTTCAGACTGTCATTTTCCAGACAGAGAAGATGGGCATTAGTACGGGCGCTACAGTTGGCATTATAGTTGGATCTGTTTTTTGTATTCTTGCGATCGTTGCAGTTACTGTACTTCTGTTCACTAGGCATTCTAGATACCGTCACAACTTGTCAAGGAAAAATCTCTCTTCAACTATTAATCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGACCTGCAATTGGCTACTGGAAATTTCAACCAATCAAGTCAAGTTGGCCGAGGAGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAATTCCGTTGTAGCCATCAAGCGTGCAGAAAAAGGATCCTTACAAGGCCAAAAAGAATTTTTGACTGAGATAAAACTCTTATCACGGTTGCATCACCGAAACTTAGTATCCCTAATAGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTGTATGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTAGTTTTGAATTTTCAGATCAAAGTACATCAACAGTAAGTCTGAATTTTCGTATGAGATTACGAATTTCACTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTTCTCGATGCTAAGTTCACGGCTAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTAAATTACGAGGGGGACGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTTTAACCCATAAACTGACAGACAAAAGTGATGTCTATAGCCTAGGAGTTGTATTCTTGGAGCTCTTAACGGGCATGCACCCTATTCAGCACGGCAAAAACATTGTCCGTGAGGTAAAATTGGCTCATCAAATGGGAACAGTTCTTTCAATTGTAGACTCAACGTTGGGTTCTTTTGCACCTGATTGTTTAGAGAGGTTTGTTGCTTTAGCCATCAGTTGTTGCCATGACAATCCCGATGAACGGCCGTCCATGCTGGTTGTGGTAAGGGAGTTGGAGAACATATTGAACATGATGCCTGACGATAGTGGCGCATTGTATTCAGACTTGTCAACAAAATCAAGTGCCAGACTTCCATCCTCACCGACATCAACGTCTGGCTTCAGCCGAGATCATTTTGCATCGGGAAGCATTTCAGGGAGCGATCTTGTCAGTGGTGTCATGCCAACCATCAGACCTCGGTGA 2874 41.44 MPSMWRDCVCVFLLLCCSSILLTGAAQTEPSDVKALLAVKRSLIDPMDQLISWSKGDPCKDNWIGVVCSGGAVGNLRVKEIQLLNKNLSGNLAPEISQLSALEKLNFMWNDLTGSIPKEIGSMVSLKLLLLNGNKLSGSLPDELGNLVKLIRFQIDENRISGPIPKSYANLASLKHLHFNNNTLSGEIPSELSKLPKLIHMLVDNNNLSGSLPPELSTMPMLLILQLDSNNFDGEIPASYENFPELVKLSLRNCSLKGPIPNFSKLANLSYLDLSWNHFTGLIPPYNLSSRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWEKMSFDSSDRLTLDLRNNSFSDISGSTNPPANVTLRLGGNPICKILSGQNTDKFCKSKNVEDGLHRSSRSSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYVNSFEAYLSKELSLVKHQLLIDSYDWEGSRLRMYLKIFPSFDSGTHKLDVNETFLITEQFMSWSFTRNNVFGPYELLNFTFPDHFQTVIFQTEKMGISTGATVGIIVGSVFCILAIVAVTVLLFTRHSRYRHNLSRKNLSSTINLKIDGVKAFSFKDLQLATGNFNQSSQVGRGGYGKVYKGILSDNSVVAIKRAEKGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSSFEFSDQSTSTVSLNFRMRLRISLGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLNYEGDVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPIQHGKNIVREVKLAHQMGTVLSIVDSTLGSFAPDCLERFVALAISCCHDNPDERPSMLVVVRELENILNMMPDDSGALYSDLSTKSSARLPSSPTSTSGFSRDHFASGSISGSDLVSGVMPTIRPR* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16488228 16503747 + CsaV3_4G027350.1 Csa04g01709 527319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01709 957 Pfam Leucine Rich Repeat 268 285 IPR001611 GO:0005515
Csa04g01709 957 Gene3D Phosphorylase Kinase; domain 1 590 694 - -
Csa04g01709 957 ProSiteProfiles Protein kinase domain profile. 619 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01709 957 SMART LRR_typ_2 266 291 IPR003591 -
Csa04g01709 957 SMART LRR_typ_2 313 337 IPR003591 -
Csa04g01709 957 SMART LRR_typ_2 171 195 IPR003591 -
Csa04g01709 957 SMART LRR_typ_2 123 147 IPR003591 -
Csa04g01709 957 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Csa04g01709 957 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Csa04g01709 957 Gene3D Ribonuclease Inhibitor 288 411 IPR032675 -
Csa04g01709 957 CDD STKc_IRAK 625 898 - -
Csa04g01709 957 SMART serkin_6 619 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01709 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Csa04g01709 957 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Csa04g01709 957 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 927 - -
Csa04g01709 957 SUPERFAMILY Protein kinase-like (PK-like) 604 921 IPR011009 -
Csa04g01709 957 Gene3D Ribonuclease Inhibitor 183 287 IPR032675 -
Csa04g01709 957 Pfam Protein kinase domain 620 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01709 957 Gene3D Transferase(Phosphotransferase) domain 1 695 911 - -
Csa04g01709 957 SUPERFAMILY L domain-like 50 379 - -
Csa04g01709 957 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 927 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00479 Csa-Chr1:3067531 Csa04g01709 Csa-Chr4:16488228 0 dispersed
Csa03g04035 Csa-Chr3:35225433 Csa04g01709 Csa-Chr4:16488228 1.25E-158 dispersed
Csa04g01709 Csa-Chr4:16488228 Csa06g01709 Csa-Chr6:15028080 1.78E-71 dispersed
Csa05g00837 Csa-Chr5:6219071 Csa04g01709 Csa-Chr4:16488228 2.00E-06 dispersed
Csa04g01709 Csa-Chr4:16488228 Csa05g00654 Csa-Chr5:4358095 4.81E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78168 PF00069 Pkinase 1.80E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01709 - - csv:101210187 1885.15