Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01716 ATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCAAATATTATTCAGGCTCCGCTTTCTGCACTATTAGAGTATTCGGGTCTTCTTCGTGGCCGTCAAAGTCATCAAGAATCAGAGGCATTGATAAGTGCTCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCATATTGAAGAATCTTCGGGTGCCACCAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCGAGGGATGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCAGGGTTGGCTTCTGTGACCTTGGGGTCGGAGCTTAGCCAGGGTGAGTCTGCCAATGAACGCGGTGCAAGAGAGGGTATTCCTGAATCGATAAATGCAGGTGCTGATGGAGATGCCTCGGAGGCAGCTGGAGGAAATAGCAGGGATTCTTCTTATCAGAGATATGACATTCAACAGGCTGCTCGGGGGATTGAGCAGATACTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATATGGATCGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATTTCTGTTTTGGTTTGCATTTCTCTTGCGTTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGTGTCCTCCCAGAGCGATTCCTCCTTTCTGGCATGCTATTTTCATCATTATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTGTTCTATTGATGTATTACAAGAACAGTAGAGGTCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTGGTCGAATATTTGCTACTACTGTACCGTGCCTTATTGCCTACTCCTGTTTGGTATCGTTTCTTCTTGAACAAAGAGTATGGGAGTCTATTTTCGTCACTATTGACGGGACTATACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACATCAGAGCAGGTCAGCGCAGCAGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTTCTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAATGGTTTGAGCGGGAACGGACATGTCCATTGTGTAGGGCGTTGGTTAAACCCGCAGATCTGAGGTCATTTGGTGATGGATCAACAAGTTTGTTTTTCCAGGTTTTCTAA 1416 44.92 MEGSGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALISARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAVSLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16557710 16565969 + CsaV3_4G027420.1 Csa04g01716 527326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01716 471 SMART ring_2 410 447 IPR001841 -
Csa04g01716 471 Pfam Zinc finger, C3HC4 type (RING finger) 408 451 - -
Csa04g01716 471 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 471 IPR044235 GO:0061630|GO:1904294
Csa04g01716 471 ProSiteProfiles Zinc finger RING-type profile. 410 448 IPR001841 -
Csa04g01716 471 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 471 - -
Csa04g01716 471 ProSitePatterns Zinc finger RING-type signature. 425 434 IPR017907 -
Csa04g01716 471 CDD RING-HC_RNFT1_like 409 448 - -
Csa04g01716 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 458 IPR013083 -
Csa04g01716 471 SUPERFAMILY RING/U-box 405 453 - -
Csa04g01716 471 MobiDBLite consensus disorder prediction 136 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01716 Csa-Chr4:16557710 Csa05g00916 Csa-Chr5:7113432 0 dispersed
Csa04g01716 Csa-Chr4:16557710 Csa03g00878 Csa-Chr3:7325848 3.44E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01716 - K22379 csv:101205267 913.679