Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01747 ATGGCGGATTACGATTTAACTCCACGAATAGCGCCAAATCTGGACCGTCATCTTGTCTTCCCTCTCCTTGAGTTCCTTCAAGAGAGACAGCTTTACCCCGATGAGCAGATCCTCAAGGCTAAAATCGAGCTTCTCAATAAGACAAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGAAGACGTTCCTCAAGATATGGTGGACAGAAGGGCGGAAGTGGTGGCGAGGCTAAAGGCTTTGGAGGAGTCTGCAGCACCACTTGTTGCTTTTTTGCAAAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAGATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTGTGCACAAACAGTGAAAGGAGCCTCAGTGCTCTTTGGGGAAAGTTGGCAGCTGAAGTATTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAATCACGACAATGGGAGAACACAAATCATTGATCTATTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCTACTGCCTTCATTGTGAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGACGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGACCCTTTCCTAGGAAAGAGGCTTGAAGAAGGCAACCTTTCTACCGTTCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAATGTTCTTGCTGAGAAGCTGAACTTAAATTACGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTCGATGCAAAGATTGATTCTAAGACAGGAACAGTTTTAATGGAACCAGTCCAGCCGAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCCGGGCGGACTTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGGCAACTAGATGA 1314 42.09 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMNVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVLMEPVQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR* 438
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 17047857 17052059 + CsaV3_4G027730.1 Csa04g01747 527357
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01747 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Csa04g01747 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 - -
Csa04g01747 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Csa04g01747 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Csa04g01747 437 SUPERFAMILY Winged helix DNA-binding domain 333 403 IPR036390 -
Csa04g01747 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Csa04g01747 437 Gene3D - 224 433 - -
Csa04g01747 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 - -
Csa04g01747 437 SMART eIF3_N_2 5 137 IPR019010 -
Csa04g01747 437 Pfam PCI domain 285 399 IPR000717 -
Csa04g01747 437 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515
Csa04g01747 437 SMART PINT_4 332 416 IPR000717 -
Csa04g01747 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01747 K03250 - csv:101205199 878.241