Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01773 ATGGCGGCAGCGGTCGGAGGAGTTAGTGTTAACGGCGCCGGTTTGATGATCGGCGGTGGAGATGTCTCGAGGGCGCATGCGGCTATGGCTTTGGTGCAATTAATTAATGGAGGTTACCATGTTATAACCAAAGTTGCCCTCAATGTTGGGATGAACCAGCTCGTCTTTTGTTTGTTCCGTGACTTGTTGGCTCTCGCGATTCTTGCCCCTGTCGCTTATGTTCGGGAGAAGAGGATTCGTTTGCCCATGACTCGGGACCTTCTCATATCGTTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTTGTTGGACTTGGCTACACTAACCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGTCTGTTAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGCACACTTGTTTGTGTCTCTGGTGCGATAGTGATGGTTTTATTCCGAGGTCCAGCTTTGATTGGAAACACTGAATCTGATCTCATGTCACATAATGAGATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGACCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGGGTTTTAAAGAAGTATCCTGCTAATTTGTCGGTCACGGCATATTCGTATTTATTTGGTGTTATATTGATGGTCATCACATCTTTCTTTATGACCAACGAATCAACAGACTGGAACTTGACACAATCAGAGTTTTTTGCTGTTCTTTATGGTGGAGTTTTTGCATCTGCTATCAATTATGGACTCTTGACATGGTGCAATAAAATATTGGGACCTGCATTGGTCGCTCTGTACAATCCACTTCAACCTGCAGCATCTGCTCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTATTTTAGGGGGATCTCTCATAATTGCCGGTCTTTATTTGGTTACTTGGGCGTCGCATAGGGAACGACAAACGACTACGGACACATTTTCTCAGGGTCTGCTTCATCGCCCAAGTCTGTAG 1125 44.98 MAAAVGGVSVNGAGLMIGGGDVSRAHAAMALVQLINGGYHVITKVALNVGMNQLVFCLFRDLLALAILAPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTESVNLLKLEGQAKVGGTLVCVSGAIVMVLFRGPALIGNTESDLMSHNEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGVILMVITSFFMTNESTDWNLTQSEFFAVLYGGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSILGGSLIIAGLYLVTWASHRERQTTTDTFSQGLLHRPSL* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17392489 17396867 + CsaV3_4G027990.1 Csa04g01773 527383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01773 374 Pfam EamA-like transporter family 29 148 IPR000620 GO:0016020|GO:0016021
Csa04g01773 374 Pfam EamA-like transporter family 213 350 IPR000620 GO:0016020|GO:0016021
Csa04g01773 374 PANTHER WAT1-RELATED PROTEIN 22 361 - -
Csa04g01773 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 356 - -
Csa04g01773 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 168 - -
Csa04g01773 374 PANTHER WAT1-RELATED PROTEIN 22 361 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01773 Csa-Chr4:17392489 Csa05g01814 Csa-Chr5:21408081 2.31E-47 dispersed
Csa04g01773 Csa-Chr4:17392489 Csa02g02098 Csa-Chr2:19067121 6.34E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01773 - - csv:101222886 684.871