Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01774 ATGCAGTTATATCATCATCCTTACTCTTTGGATAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAGAGCATTGATTACACGTCGTATCATGTCAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAGTGCTAAACTTCCCGTATTTCAAAATGGTTCCCACATTATTTTCGACACAATTGAGATAATTCAGTATATAGAGAGAATTGCAGTTGTCTCCTCAGGGACCGACGAGATAATGCCAAGTAGCAGGGAAGTTGTTGAATGGATGCATAAGATACAAGAATGGAATCCAAAATATTTCACTCTTGCCCATATCCCTGAAAAGTACCGTCTTACTGTCACCAGATTTATAAGGCGAGTGGTGATCTCTCGGATGGCAGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTCAGAGAAGCATACGAGACTGAAGACAAATTGAAAAACAAATCTGTTGTCAAACAAAGCACTGATCATCTAGTTGCACTTCTCGATGAAATCGAATTGAAACTAAGCGAGACTTCTTACATAGCAGGGGAAGAGTTCACCATGGCTGATGCCGTATTCATTCCAGTGCTGGCTCGACTCGAGCTGTTGAAGCTGGCAGATGAGTATATAGGCAGCAGACCAAACATTTCAGAGTATTGGATATTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGAAAGTATTTCAAGGGATGGAGAAAGCATAAAACACTTCTGAAAACTTGGTGCTTTGTTCATATCAGAACCTTGCTGAGAAGATATTGA 804 42.29 MQLYHHPYSLDSQKVRLALEEQSIDYTSYHVNPITAKNMDSSFFKINPSAKLPVFQNGSHIIFDTIEIIQYIERIAVVSSGTDEIMPSSREVVEWMHKIQEWNPKYFTLAHIPEKYRLTVTRFIRRVVISRMAETPEMAAAYHRKLREAYETEDKLKNKSVVKQSTDHLVALLDEIELKLSETSYIAGEEFTMADAVFIPVLARLELLKLADEYIGSRPNISEYWILVQQRPSYKKVIGKYFKGWRKHKTLLKTWCFVHIRTLLRRY* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17398529 17402133 + CsaV3_4G028000.1 Csa04g01774 527384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01774 267 Pfam Glutathione S-transferase, C-terminal domain 162 209 - -
Csa04g01774 267 Gene3D Glutaredoxin 1 75 - -
Csa04g01774 267 CDD GST_N_family 1 73 - -
Csa04g01774 267 SFLD Main (cytGST) 1 231 - -
Csa04g01774 267 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Csa04g01774 267 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Csa04g01774 267 SUPERFAMILY GST C-terminal domain-like 137 242 IPR036282 -
Csa04g01774 267 Gene3D - 127 238 - -
Csa04g01774 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 118 251 IPR010987 -
Csa04g01774 267 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Csa04g01774 267 CDD GST_C_family 147 225 - -
Csa04g01774 267 SFLD Glutathione Transferase (cytosolic) 1 231 IPR040079 -
Csa04g01774 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01774 K22077 GDAP1; ganglioside-induced differentiation-associated protein 1 - csv:101222476 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01774 Csa-Chr4:17398529 Csa07g01817 Csa-Chr7:18391662 2.37E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g210 Blo01g01309 . Bda01g00677 . Bpe02g00628 . . Bma01g02091 . . Cma01g01364 Cma09g00767 . . . Cpe06g00604 . . . . . . . . . . . . . . . Cone4ag1434 Cone7ag1501 . . . Csa04g01774 . . . . . . . . . . . Cmo01g01417 Cmo09g00759 . . . Car09g00677 . Cpe02g00572 Bhi09g02716 . . . . . . Cla11g01560 Cam11g1625 Cec11g1651 . Clacu11g1781 Cmu11g1597 . . . Chy07g00602 Cme07g00806
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01815 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.7e-64 242.7
Csa07g01817 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.7 6.5e-64 240.7
Csa07g01816 . 18 176 Glutathione S-transferase Gene Family AT4G02520 58.0 3.0e-45 178.7
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 4.5e-65 244.6
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.5 4.5e-65 244.6
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT2G02930 59.5 2.5e-47 185.7
Csa07g01815 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 3.4e-59 225.3
Csa07g01817 . 6 215 Glutathione S-transferase Gene Family AT1G02950 53.1 4.9e-58 221.5
Csa07g01816 . 18 173 Glutathione S-transferase Gene Family AT1G02950 54.1 4.9e-42 168.3
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 2.4e-63 238.8
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 2.4e-63 238.8
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02930 56.9 5.1e-45 177.9
Csa07g01817 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.7 7.6e-65 243.8
Csa07g01815 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 3.8e-64 241.5
Csa07g01816 . 18 177 Glutathione S-transferase Gene Family AT1G02920 58.8 2.4e-47 185.7
Csa07g01815 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 1.4e-68 256.5
Csa07g01817 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.7 1.9e-65 246.1
Csa07g01817 . 20 215 Glutathione S-transferase Gene Family AT1G49860 50.5 5.1e-47 184.9
Csa04g01557 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 3.3e-50 195.3
Csa03g00999 . 169 363 Glutathione S-transferase Gene Family AT2G29450 50.5 1.3e-49 193.4
Csa04g00769 . 3 145 Glutathione S-transferase Gene Family AT2G29420 53.1 1.7e-38 156.4
Csa04g01568 . 3 215 Glutathione S-transferase Gene Family AT3G09270 54.0 2.1e-65 245.7
Csa04g01557 . 1 221 Glutathione S-transferase Gene Family AT3G09270 54.8 1.8e-64 242.7
Csa04g01558 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Csa04g01561 . 3 215 Glutathione S-transferase Gene Family AT3G09270 52.6 3.8e-62 235.0
Csa04g01569 . 3 222 Glutathione S-transferase Gene Family AT3G09270 53.4 1.9e-61 232.6
Csa04g01555 . 2 216 Glutathione S-transferase Gene Family AT3G09270 51.4 2.7e-60 228.8
Csa04g01560 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 4.6e-60 228.0
Csa04g01567 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.7 1.0e-59 226.9
Csa03g00999 . 169 372 Glutathione S-transferase Gene Family AT3G09270 51.9 2.8e-57 218.8
Csa04g00772 . 4 218 Glutathione S-transferase Gene Family AT1G78380 71.2 7.4e-87 317.0
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78380 67.1 1.2e-84 309.7
Csa05g01429 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.9e-66 249.2
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78380 66.0 1.7e-51 199.5
Csa04g00772 . 8 215 Glutathione S-transferase Gene Family AT1G78370 65.4 1.9e-79 292.4
Csa04g00770 . 1 214 Glutathione S-transferase Gene Family AT1G78370 61.2 4.4e-76 281.2
Csa05g01429 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 2.8e-62 235.3
Csa04g00769 . 7 147 Glutathione S-transferase Gene Family AT1G78370 61.0 5.7e-47 184.5
Csa04g00770 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.5 6.2e-78 287.3
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 6.2e-78 287.3
Csa05g01429 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.8 1.8e-61 232.6
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G78340 62.6 2.9e-51 198.7
Csa03g00999 . 169 314 Glutathione S-transferase Gene Family AT1G78340 51.7 3.9e-40 161.8
Csa04g00772 . 3 218 Glutathione S-transferase Gene Family AT1G78320 51.4 8.3e-58 220.3
Csa04g00772 . 1 217 Glutathione S-transferase Gene Family AT1G17180 69.1 2.2e-86 315.5
Csa04g00770 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.9 2.5e-82 302.0
Csa05g01429 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 8.6e-67 250.4
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G17180 62.6 6.6e-51 197.6
Csa04g00772 . 1 215 Glutathione S-transferase Gene Family AT1G17190 60.0 4.2e-74 274.6
Csa04g00770 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.9 1.7e-70 262.7
Csa04g00769 . 2 176 Glutathione S-transferase Gene Family AT1G17190 54.3 5.2e-48 188.0
Csa04g00770 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.6 9.4e-69 256.9
Csa04g00772 . 1 216 Glutathione S-transferase Gene Family AT3G43800 51.8 9.1e-64 240.4
Csa05g01429 . 1 219 Glutathione S-transferase Gene Family AT3G43800 50.9 1.2e-60 229.9
Csa04g00769 . 3 147 Glutathione S-transferase Gene Family AT3G43800 56.8 4.0e-43 171.8
Csa04g00772 . 3 216 Glutathione S-transferase Gene Family AT1G53680 55.1 2.1e-65 245.7
Csa04g00770 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 1.1e-64 243.4
Csa05g01429 . 1 225 Glutathione S-transferase Gene Family AT1G53680 54.6 1.4e-64 243.0
Csa04g00769 . 1 147 Glutathione S-transferase Gene Family AT1G53680 56.3 4.5e-39 158.3
Csa02g01635 . 51 222 Glutathione S-transferase Gene Family AT2G02390 66.3 5.7e-59 224.2
Csa02g01638 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.3 5.3e-57 217.6
Csa03g00969 . 61 227 Glutathione S-transferase Gene Family AT2G02390 50.3 3.0e-44 175.3
Csa02g01635 . 8 220 Glutathione S-transferase Gene Family AT2G02380 63.8 5.6e-74 274.2
Csa02g01638 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 3.2e-69 258.5
Csa03g00969 . 20 226 Glutathione S-transferase Gene Family AT2G02380 51.7 6.9e-56 214.2
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41210 70.0 9.7e-96 346.7
Csa04g00600 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 4.1e-92 335.9
Csa03g03227 . 6 235 Glutathione S-transferase Gene Family AT5G02780 66.7 6.1e-87 317.4
Csa03g03229 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.0 1.3e-81 299.7
Csa05g00645 . 77 296 Glutathione S-transferase Gene Family AT5G02780 63.5 5.2e-78 287.7
Csa03g03230 . 14 228 Glutathione S-transferase Gene Family AT5G02780 63.6 3.4e-77 285.0
Csa05g00645 . 54 294 Glutathione S-transferase Gene Family AT3G55040 63.6 6.0e-84 307.8
Csa03g03227 . 6 236 Glutathione S-transferase Gene Family AT3G55040 58.4 1.2e-76 283.5
Csa03g03229 . 3 230 Glutathione S-transferase Gene Family AT3G55040 58.1 1.3e-75 280.0
Csa03g03230 . 4 228 Glutathione S-transferase Gene Family AT3G55040 55.8 2.8e-73 272.3
Csa03g03227 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.5 3.9e-94 341.3
Csa03g03229 . 7 232 Glutathione S-transferase Gene Family AT5G02790 68.7 3.8e-89 324.7
Csa03g03230 . 6 228 Glutathione S-transferase Gene Family AT5G02790 64.7 3.1e-83 305.1
Csa05g00645 . 69 296 Glutathione S-transferase Gene Family AT5G02790 61.1 1.9e-80 295.8
Csa05g00668 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.2 1.0e-80 296.6
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G19570 60.3 5.9e-73 270.8
Csa05g00668 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.8 8.8e-85 310.1
Csa03g02084 . 119 326 Glutathione S-transferase Gene Family AT1G75270 62.2 4.1e-74 274.6
Csa03g02084 . 63 329 Glutathione S-transferase Gene Family AT5G16710 66.9 9.6e-102 366.7
Csa05g00668 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 1.7e-74 276.2
Csa04g01774 . 1 268 Glutathione S-transferase Gene Family AT1G77290 68.7 1.2e-107 386.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005962 2 5 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01774 Csa_Chr04 FPKM 2.365682 2.540216 14.250419 17.723124 6.71351 5.805647 8.038519 9.479287 7.616766 8.817351