Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01775 ATGGGAAGAGGGAAAATAGAAATAAAAAGAATAGAGAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAGAAATGGTATCATCAAAAAAGCCAAAGAAATTACTGTTCTTTGCGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCTTTGGTTGATATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAAATGGATAGAGTTAAGAAAGAGAATGACAACATGCAGATTGAGCTAAGGCATTTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGTTAATGGCTCTCGAAGAAGCTCTTGAAAATGGCCTCACCGGTGTTCGTGAGAAGCAGTCGGAATTCATGAAAATGATGAGAACAAATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTTAACTATGAGCTGTACCAAAAGGAGATGGTTGCAATGGGAGATAGTGTGAGAGAAATGGATATTGGATATAATCAAAGAATGAGAGATTTCAATTCTCAAATGCCTTTTGCTTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGGAATAA 636 37.89 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17399610 17406194 - CsaV3_4G028010.1 Csa04g01775 527385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01775 211 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Csa04g01775 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Csa04g01775 211 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01775 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa04g01775 211 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Csa04g01775 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 Coils Coil 77 111 - -
Csa04g01775 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Csa04g01775 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa04g01775 211 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04253 Csa-Chr3:37264443 Csa04g01775 Csa-Chr4:17399610 9.33E-43 dispersed
Csa04g01775 Csa-Chr4:17399610 Csa06g03905 Csa-Chr6:30881273 1.07E-38 dispersed
Csa04g01775 Csa-Chr4:17399610 Csa01g00975 Csa-Chr1:6027236 5.42E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31582 PF01486 K-box 1.20E-18 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01775 K09264 - csv:101222239 413.305