Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g01776 | ATGCTGAAGCCCAAGCCATTCGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCTCCGGAGATGTTCGATGCTCTTCACGACGCTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCCGCCGATCACGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCGGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGATGTCAGTTTTGTTATTGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTGAACATCGTGTTGTGCCTCAGGAGGATATCGGGTCCTTCCATTTTCTGGATTGA | 570 | 47.19 | MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEDIGSFHFLD* | 190 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 17417632 | 17420304 | + | CsaV3_4G028020.1 | Csa04g01776 | 527386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g01776 | 189 | Gene3D | BRCT domain | 97 | 186 | IPR036420 | - | |
| Csa04g01776 | 189 | Gene3D | BRCT domain | 16 | 94 | IPR036420 | - | |
| Csa04g01776 | 189 | ProSiteProfiles | BRCT domain profile. | 100 | 184 | IPR001357 | - | |
| Csa04g01776 | 189 | SMART | BRCT_7 | 4 | 86 | IPR001357 | - | |
| Csa04g01776 | 189 | SMART | BRCT_7 | 97 | 174 | IPR001357 | - | |
| Csa04g01776 | 189 | Pfam | twin BRCT domain | 103 | 166 | IPR001357 | - | |
| Csa04g01776 | 189 | SUPERFAMILY | BRCT domain | 57 | 181 | IPR036420 | - | |
| Csa04g01776 | 189 | CDD | BRCT | 103 | 170 | - | - | |
| Csa04g01776 | 189 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 7 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g02443 | Csa-Chr3:22625867 | Csa04g01776 | Csa-Chr4:17417632 | 5.95E-36 | dispersed | |
| Csa03g02444 | Csa-Chr3:22626708 | Csa04g01776 | Csa-Chr4:17417632 | 3.47E-49 | dispersed | |
| Csa04g01776 | Csa-Chr4:17417632 | Csa05g01372 | Csa-Chr5:14422178 | 3.18E-28 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g01776 | K10728 | - | csv:101212525 | 373.629 |