Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01777 ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATCGGGTTCGATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGAGAAAGATTGTCTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTACCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTTTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAAAAAGCGCAAGTTCTTTGACGAAGCCATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATTGAGGACTTATTGGAGCAGACAACTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGATAAAAGTATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAGACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTCGGCAATTCTACTACTGAAGATGGGACTGTGGGCATATGTGATGGCTTTAGTGAAACACAAACGGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCAGGAAGGCAAATGCTCTTGGACAAAGTTCGAACCCGGAGTAGCATGACTTGA 1107 42.37 MKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIHSTIPRDQSAGTNSSFIGAAERISSTKKKRKFFDEAIQKRSLFVGNSSTQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVVGYEEDLSGRQMLLDKVRTRSSMT* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17422137 17435718 + CsaV3_4G028030.1 Csa04g01777 527387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01777 368 ProSiteProfiles BRCT domain profile. 61 144 IPR001357 -
Csa04g01777 368 SUPERFAMILY BRCT domain 26 145 IPR036420 -
Csa04g01777 368 Pfam twin BRCT domain 65 126 IPR001357 -
Csa04g01777 368 SMART BRCT_7 58 134 IPR001357 -
Csa04g01777 368 CDD BRCT_TopBP1_rpt2_like 59 134 - -
Csa04g01777 368 Gene3D BRCT domain 61 153 IPR036420 -
Csa04g01777 368 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 3 357 - -
Csa04g01777 368 MobiDBLite consensus disorder prediction 310 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01777 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101212525 736.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00004 Csa-Chr2:118042 Csa04g01777 Csa-Chr4:17422137 1.87E-35 dispersed
Csa04g01777 Csa-Chr4:17422137 Csa04g02777 Csa-Chr4:26755059 1.92E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01777 Csa_Chr04 FPKM 9.949797 9.628702 22.946129 23.433855 18.773718 18.524712 18.451126 41.863434 40.58345 39.532673