Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01779 ATGGCACCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAATTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTGCCCATCAATTATTCGGTCCCGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGGCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTCTCTGGGATTATCCCTCAGGAGGTTGTTGATGCACTTTTTGTTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGAAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGTTTTAAGAAGTATACAACTGTAG 1011 43.32 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17453127 17458839 - CsaV3_4G028050.1 Csa04g01779 527389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01779 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677|GO:0006260
Csa04g01779 336 Gene3D - 3 173 IPR027417 -
Csa04g01779 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 234 IPR027417 -
Csa04g01779 336 Gene3D - 176 239 - -
Csa04g01779 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Csa04g01779 336 CDD HLD_clamp_RFC 174 236 - -
Csa04g01779 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Csa04g01779 336 SMART AAA_5 41 174 IPR003593 -
Csa04g01779 336 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Csa04g01779 336 Gene3D - 240 330 - -
Csa04g01779 336 CDD AAA 26 166 - -
Csa04g01779 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01779 Csa-Chr4:17453127 Csa06g02139 Csa-Chr6:19120488 2.87E-60 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01779 K10755 - csv:101221224 659.833