Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01779 | ATGGCACCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAATTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTGCCCATCAATTATTCGGTCCCGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGGCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTCTCTGGGATTATCCCTCAGGAGGTTGTTGATGCACTTTTTGTTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGAAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGTTTTAAGAAGTATACAACTGTAG | 1011 | 43.32 | MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL* | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17453127 | 17458839 | - | CsaV3_4G028050.1 | Csa04g01779 | 527389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01779 | 336 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 240 | 326 | IPR008921 | GO:0003677|GO:0006260 | |
Csa04g01779 | 336 | Gene3D | - | 3 | 173 | IPR027417 | - | |
Csa04g01779 | 336 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 234 | IPR027417 | - | |
Csa04g01779 | 336 | Gene3D | - | 176 | 239 | - | - | |
Csa04g01779 | 336 | Pfam | ATPase family associated with various cellular activities (AAA) | 45 | 172 | IPR003959 | GO:0005524|GO:0016887 | |
Csa04g01779 | 336 | CDD | HLD_clamp_RFC | 174 | 236 | - | - | |
Csa04g01779 | 336 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 7 | 330 | - | - | |
Csa04g01779 | 336 | SMART | AAA_5 | 41 | 174 | IPR003593 | - | |
Csa04g01779 | 336 | Pfam | Replication factor C C-terminal domain | 241 | 326 | IPR013748 | - | |
Csa04g01779 | 336 | Gene3D | - | 240 | 330 | - | - | |
Csa04g01779 | 336 | CDD | AAA | 26 | 166 | - | - | |
Csa04g01779 | 336 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 7 | 330 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g01779 | Csa-Chr4:17453127 | Csa06g02139 | Csa-Chr6:19120488 | 2.87E-60 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01779 | K10755 | - | csv:101221224 | 659.833 |