Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01782 ATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGCGGAAAAAGAAGAGGGATTCCCAAATTGGCCGTAGGAACAACTATTCCAACACTTTCAACAACGGTACTAACCGGCATGATGATGATGATGAAGATGAAGACCTTGTTGCTGCTGAAAATGACGAAATGGAACGTGATAACAATGATGACTCTGAGGACCCTCAGATTGGGCTTCACCCCACGCCCAATTCCACTATTCAGGAGCCTGAACTACTGTCCGATGATAAATTTCGAGTTTCTGAGTTTCCTCAGGTTGTTAAACGGGCTGTTACTCGGCCTCATTCTTCTGTTTTGGCTGTTGTGGCAATGGAGAGGACAAATCAGTATGGCGAGAGTAAAGGGGTGCCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTACGGGCAGCTTCAGGCACTGTCTGCTATGCCGGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGTGGAGGCTGGGAATGCTGCCTATGTAATAACTCCGCCACCGATCATGGAAGGGCGTGGCGTGGTTAAGAGGTTTGGGAGTAGGGTACATGTTGTCCCTATGCACTCAGATTGGTTTTCACCTGCCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCTGACCGCACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGATTGTCAAGGGTTGGTTGATGGTGTCAGTAATGAAGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAACCATGGAATAGCAATTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTTAAATTTGACAAACCAAAATGTAGGCTCAAGGCGGCTGATGTCTATTCGGCACTTCCATGCCGTGATGACATTGATGGTTTGTGTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCGGTCTGTTCCCATTGCATACTACCAGTCACAGAAGGAGGTTGATGTTTTACTTTGCTCTGACTGCTTTCATGAAGGCAAATACGTTGCTGGCCATTCAAGCGTTGATTTTCTGAGGGTGGACATGGCGAAAGATTATGGTGAACTAGATAGTGAAAATTGGACTGATCAAGAAACTCTATTGCTTTTAGAAGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACCGAACACGTTGGGTCCAAGTCTAAAGCTCAGTGCATTATACATTTTCTCCGCTTATCAGTGGAGGATGGCCTTCTAGAAAATGTTGATGTGCCTGGGGTTTCTCTCTCATCAAGTGCTTCACATGGAGGAGATAGTGAGAAGTCACGCTCAAATATGAACGGAAACATAGCAGGATCTTCCTCTCAAGATAATAAGGAGATGCACGATAGGCTTCCCTTTGCCAATTCTGGGAATCCAGTCATGGCGTTGGTTGCTTTTCTCGCATCTGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCGTCTGGGAGCATTTTTCATATGGAGGGTTCTGTCAACGCTAATAGGATGAATGTGGATGCCAAACAAGCCAGAGAAGGTAGCTCCTATGGAGAACTTCCAAATTCAACCGATCGAAAAGATGAGAACAAGGCAGAGACAGAAGCAACACTATTATCATCTGAAAGAGTTAAAGTTGCAGCAAAAGCAGGCCTTGCTGCTGCTGCAACAAAGGCAAAATTGTTTGCTGACCACGAAGAACGAGAAATCCAACGACTGTCTGCTAATATTATAAATCATCAGTTAAAGAGACTGGAGCTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTTGCAGAGCGAGCAAGAATGTTAGGTGTCCAATTTGGACCTGCTGGAGTTACGCCACCTGCGAGTTTACCAGGGGTTATCCCTTCCATGGTAGTAAACAACAGCAACACAAACAGTAGGCCGAATATGATCTCACCTCCAGCTTCACAGCCGAGTGTTTCAGGGTACAGCAACAACCAACAACCACTTCACCCCCACATGTCATATATGCCTCGACAGCCGATGTTTGGTTTGGGACAAAGACTACCCTTATCGGCAATTCAGCAGCAGCAGCAACAACAACAACTGCCCTCGACAACTTCTTCTAATGCCATGTTCAATGGTCCAAGCAATGCACAGCCTTCTCTCAGTCATCCAATGATGAGGCCTGTTACTGGATCCAGCTCTGGCCTAGGCTGA 2448 45.18 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYSNTFNNGTNRHDDDDEDEDLVAAENDEMERDNNDDSEDPQIGLHPTPNSTIQEPELLSDDKFRVSEFPQVVKRAVTRPHSSVLAVVAMERTNQYGESKGVPGNSLILENVSYGQLQALSAMPADSPALLDQERVEAGNAAYVITPPPIMEGRGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVDGVSNEDLTRIVRFLDHWGIINYCAPTPSCEPWNSNSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKAADVYSALPCRDDIDGLCDLDNRIRERLAENHCSSCSRSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSVDFLRVDMAKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSSASHGGDSEKSRSNMNGNIAGSSSQDNKEMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFHMEGSVNANRMNVDAKQAREGSSYGELPNSTDRKDENKAETEATLLSSERVKVAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPASLPGVIPSMVVNNSNTNSRPNMISPPASQPSVSGYSNNQQPLHPHMSYMPRQPMFGLGQRLPLSAIQQQQQQQQLPSTTSSNAMFNGPSNAQPSLSHPMMRPVTGSSSGLG* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17485340 17491964 - CsaV3_4G028080.1 Csa04g01782 527392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01782 815 MobiDBLite consensus disorder prediction 479 515 - -
Csa04g01782 815 ProSiteProfiles Myb-like domain profile. 413 463 IPR001005 -
Csa04g01782 815 MobiDBLite consensus disorder prediction 42 64 - -
Csa04g01782 815 Pfam Myb-like DNA-binding domain 419 461 IPR001005 -
Csa04g01782 815 MobiDBLite consensus disorder prediction 720 749 - -
Csa04g01782 815 MobiDBLite consensus disorder prediction 766 815 - -
Csa04g01782 815 SUPERFAMILY Homeodomain-like 192 290 IPR009057 -
Csa04g01782 815 CDD SANT 420 462 IPR001005 -
Csa04g01782 815 Coils Coil 633 653 - -
Csa04g01782 815 MobiDBLite consensus disorder prediction 479 506 - -
Csa04g01782 815 SMART sant 417 465 IPR001005 -
Csa04g01782 815 Gene3D - 417 467 - -
Csa04g01782 815 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 74 814 - -
Csa04g01782 815 MobiDBLite consensus disorder prediction 720 815 - -
Csa04g01782 815 ProSiteProfiles SWIRM domain profile. 193 291 IPR007526 GO:0005515
Csa04g01782 815 Pfam SWIRM-associated region 1 620 690 IPR032451 -
Csa04g01782 815 ProSiteProfiles SANT domain profile. 416 467 IPR017884 -
Csa04g01782 815 MobiDBLite consensus disorder prediction 1 86 - -
Csa04g01782 815 Pfam SWIRM domain 196 282 IPR007526 GO:0005515
Csa04g01782 815 MobiDBLite consensus disorder prediction 580 602 - -
Csa04g01782 815 PANTHER SWI/SNF COMPLEX-RELATED 74 814 - -
Csa04g01782 815 SUPERFAMILY Homeodomain-like 418 467 IPR009057 -
Csa04g01782 815 Gene3D - 199 286 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01782 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1550.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01782 Csa-Chr4:17485340 Csa07g01259 Csa-Chr7:12553038 1.38E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01782 Csa_Chr04 FPKM 0.0 0.0 0.289088 0.0 5.959745 5.427104 6.825485 0.0 0.0 0.0