Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01789 ATGGCGGAAACAACGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGACGGAGCTGAGAGAGAGCTATAATTCCGGCAAAACCCGAAGCTACGAATGGAGAGAGAATCAACTGAAGAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGTGATGGTTCAAACGGTTAATTCCGATCTTCATAAACCCGAATTCGAAGCCTTCGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCAATTAAGGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAATCTTCAATTACCGTATTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTTGGCGTTGTCCTAATCATTTCAGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCTGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTAGAAAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTCAGGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAAAGTGGGGCGCATCGTGATGGCAGCTGCTGCCAAGCATCTTACGCCTGTTGTTTTAGAGCTTGGAGGAAAATCTCCCGTAGTAGTAGATTCAAAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCAGATTATGTCATAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTGTATGAAACAAGAACTGGAGAAATTTTACGGAAAGAATCCCTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTCGATCGCTTGACAAGGCTCTTAGATGATGATAAAATTTCTGGCAAGATTGTGCATGGAGGCGAAAAGGACAAATCCAAATTACAGATTGCTCCCACCATCTTATTGGATGTCCCTCGAGACTCTTTGATCATGACGGAAGAGATTTTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGATAGCTTCGAAATAGTGAATTCAGGCACAAAGCCGCTAGCAGCATATTTATTTTCCAACAACAAAAAGCTCAAGGAACAGTTTGTGGCTTGTATCTCTGCAGGAGGTGTGGTTATCAACGACACCACCATACATCTAGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAAGTTTCGTGGGTGACGTGCCAATGCGTTACCCGCCTTACACTGACGGAAAGCTAAGATTTCTTAAAGCTCTTCTTGGAGGTGGCATCTTGGAACTCATTCGTGCTATTCTTGGTTGGTCGTAA 1455 42.96 MAETTVFDGEAAERVVTELRESYNSGKTRSYEWRENQLKNLLKLVCENEEVMVQTVNSDLHKPEFEAFAHEIALLKGSCKLAIKELRRWMAPEKVKSSITVFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLEKYLDTSAVKVVEGAVPETQALLEQKWDKIFYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVASRRIIAGKWGCNNGQACIAPDYVITTKEFAPKLVECMKQELEKFYGKNPLETKDLSRIVNANHFDRLTRLLDDDKISGKIVHGGEKDKSKLQIAPTILLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGTKPLAAYLFSNNKKLKEQFVACISAGGVVINDTTIHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTDGKLRFLKALLGGGILELIRAILGWS* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17543635 17558652 - CsaV3_4G028150.1 Csa04g01789 527399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01789 484 Pfam Aldehyde dehydrogenase family 5 441 IPR015590 GO:0016491
Csa04g01789 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620
Csa04g01789 484 PANTHER ALDEHYDE DEHYDROGENASE 4 484 - -
Csa04g01789 484 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491
Csa04g01789 484 CDD ALDH_F3FHI 12 443 - -
Csa04g01789 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 20 439 IPR016162 GO:0016491
Csa04g01789 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491
Csa04g01789 484 PIRSF ALDH 1 476 IPR012394 GO:0006081
Csa04g01789 484 PANTHER ALDEHYDE DEHYDROGENASE 4 484 IPR012394 GO:0006081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01412 Csa-Chr4:14136883 Csa04g01789 Csa-Chr4:17543635 1.22E-158 dispersed
Csa04g01789 Csa-Chr4:17543635 Csa06g01741 Csa-Chr6:15307392 8.53E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01789 K00128 - csv:101219329 927.161