Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01794 ATGAAGACGGAATACGCCATTTTCAGTTTAACCCTCCAACAAGTCTTCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTTCCTTCATTCTTTTTCCGAGAATTTTGAACAGTTTACTCAAAATCATCATTCTACAACCAAAATCATCATTCTCCGATTACTCATGTCTTCGGATTATGCGTTGAAGGTCCCTGCTGAACTTGAATCAGCGTTGCGATTGAAGGCTGTTCAGTACTTCGTTACAAAAAGGCCGTGGCTTGATCTCTATGGGGTTAATGTTAGACCTGTCGCACCATTCGGAAGTTCAAGTAGGCAGCCATTTGTTGATCCAGCATTAATACATCGCTGTTTACCTGATGAGTTACTTTTTGAGGTCTTTGCCAGAATGACTCCTTATGACCTGGGACGGGCGTCGTGTGTGTGTCGAAAATGGAGATACACCATCCGGAATCCTGTATTCTGGCGTAATGCTTGTTTGAAGGCTTGGCAGCTCTCTGGTGTGGTTGAAAACTACAAGTTTTTGCAGTCTATGTATGATGGATCATGGAGAAAAATGTGGCTTTTACGGCCAAGGATCCGCACTGATGGCCTTTATGTTAGCAGGAATACTTACATACGTGCTGGGATCGCAGAGTGGAAGATTACCAATCCAGTTCACTTGGTCTGCTATTTCCGTTACATAAGATTTTTTCCTTCTGGGCGATTTCTCTACAAGAATTCTTCACAGAAGATTAAAGATGTGGCTAAGTGCATGAATTTTCGTGCTTCAAAAGCTGACTGTATTTTTGGTGGACATTATACCTTGTCAGATGATAAGGTTGAAGCAGCTGTTCTGTACTCAGGGGCACGTCCTACTGTGCTCAGAATTCGCATGAGGCTAAGAGGAACATCAACAGGGGCTAATAACCGAATGGATCTATTGACCCTTGTTACCAGCGGTATGAATAACAATGAGGTTGGTGATCCTGAAGAAGATATCCTTGGCATAGTGGAAAGATGGCGAGACGATGAAACACACAACCCAGATGTGCCTGCAGTTTCTCACAAGCGGGGTCTGACACCTTTTATATTTGTTCCTTTTGATCAGGTGGAAACATCAGAACTAAACTTGCCTGTAGATAAGATGGACTATTTTGTACCCGGTTGA 1152 43.32 MKTEYAIFSLTLQQVFPSLSLSLSLSLLFLHSFSENFEQFTQNHHSTTKIIILRLLMSSDYALKVPAELESALRLKAVQYFVTKRPWLDLYGVNVRPVAPFGSSSRQPFVDPALIHRCLPDELLFEVFARMTPYDLGRASCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFLQSMYDGSWRKMWLLRPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVAKCMNFRASKADCIFGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLRGTSTGANNRMDLLTLVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETSELNLPVDKMDYFVPG* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17614292 17620086 + CsaV3_4G028200.1 Csa04g01794 527404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01794 383 PANTHER F-BOX ONLY PROTEIN 9 56 367 - -
Csa04g01794 383 ProSiteProfiles F-box domain profile. 113 159 IPR001810 GO:0005515
Csa04g01794 383 PANTHER F-BOX ONLY PROTEIN 48-RELATED 56 367 IPR045118 GO:0019005|GO:0031146
Csa04g01794 383 SMART fbox_2 119 159 IPR001810 GO:0005515
Csa04g01794 383 Pfam F-box-like 117 162 IPR001810 GO:0005515
Csa04g01794 383 Gene3D - 108 197 - -
Csa04g01794 383 SUPERFAMILY F-box domain 117 195 IPR036047 GO:0005515
Csa04g01794 383 Pfam F-box only protein C-terminal region 174 383 IPR045464 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01794 K10295 FBXO9; F-box protein 9 - csv:101219089 768.459
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g255 . . . . . . . . . . . Cma09g00791 . . . Cpe06g00624 . . . . . . . . . . . . . . . Cone4ag1413 Cone7ag1525 . . Lsi04g02394 Csa04g01794 . . . . . Bda01g01441 Bpe02g01645 . . . . . Cmo09g00783 . . . Car09g00704 . . Bhi09g02687 . . . . . . Cla11g01539 Cam11g1600 Cec11g1629 Cco11g1630 Clacu11g1757 Cmu11g1573 Cre11g1991 . . Chy07g00633 Cme07g00847
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013943 1 2 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01794 Csa_Chr04 FPKM 17.096077 18.722982 12.093139 12.784939 13.529848 10.31628 12.6087 12.424711 12.605831 12.702563