Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01808 ATGGGTGCTGAAACAGGGCTTGCAATGTTTTGTGGAATGATTCAAAAAATAAAACCCTACCTGGCTATGGTTTCCTTGCAATTTGGATATGCAGGGATGTATATTATCACCATGCTTTGTCTTAAGAAAGGGATGAACCATTACGTTCTCGCCGTCTATCGACACGTCGTTGCCACCATTGTCATCACCCCCTTTGCTATCGTCCTCGAAAGAAAGATAAGGCCGAAGATGACATTAGGAATCTTTGCACGAGTCTTGCTCCTTGGATTTCTCGAGCCTGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTTACCTCAGCAACGTTTACCTCTGTCACCATCAATATTCTACCTGCAGTGACGTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAACTTCAAGAAGATCCGTAGCATTGCGAAGGTGGCAGGAACATTGGTAACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTTCACGGTCATGGACGACATGCCGCCCACAACAGCAGCAGCAGCGAATCTGCTGACCAGCACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATTGTGGGTTGGTCGGGCTTCTTCATCTTACAATCGTTCACGCTGAGAAAATATCCGGCGGAGCTGTCCTTAACGGCCCTGATATGCGTAGCCGGTGCAGTGGAGGGCTCCATCGTGACGCTTATTATGGAGCGTGACTTTACCGTGTGGGTCATCGGCTGGGACTCTCGTCTTCTTGCCGCTGTTTATACTGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGTGTGGTAATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACACCTCTCTGCATGATTATTACCGCCATTCTTGGTTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATAGGAGCAATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGAAAAGCCAAAGACCACATAAATAAATTGACGAATCAAAAAAGCAACGCCGCCACCGAATTACCGATCACCAACGAGCCGGAAACTACCGCCGCCGAGCGTTGTTCTTCAAAAGCTCCACCGGCTTGA 1125 47.38 MGAETGLAMFCGMIQKIKPYLAMVSLQFGYAGMYIITMLCLKKGMNHYVLAVYRHVVATIVITPFAIVLERKIRPKMTLGIFARVLLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNFKKIRSIAKVAGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHNSSSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGAVEGSIVTLIMERDFTVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHINKLTNQKSNAATELPITNEPETTAAERCSSKAPPA* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17728900 17732349 - CsaV3_4G028340.1 Csa04g01808 527418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01808 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Csa04g01808 374 MobiDBLite consensus disorder prediction 350 364 - -
Csa04g01808 374 MobiDBLite consensus disorder prediction 350 374 - -
Csa04g01808 374 Pfam EamA-like transporter family 31 144 IPR000620 GO:0016020|GO:0016021
Csa04g01808 374 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Csa04g01808 374 PANTHER WAT1-RELATED PROTEIN 13 356 - -
Csa04g01808 374 PANTHER WAT1-RELATED PROTEIN 13 356 IPR030184 GO:0016021|GO:0022857
Csa04g01808 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00981 Csa-Chr2:9339464 Csa04g01808 Csa-Chr4:17728900 1.87E-64 dispersed
Csa02g01074 Csa-Chr2:10474274 Csa04g01808 Csa-Chr4:17728900 5.93E-85 dispersed
Csa02g01181 Csa-Chr2:11574373 Csa04g01808 Csa-Chr4:17728900 6.96E-139 dispersed
Csa04g01808 Csa-Chr4:17728900 Csa04g01903 Csa-Chr4:18776633 5.38E-120 dispersed
Csa05g02916 Csa-Chr5:29640781 Csa04g01808 Csa-Chr4:17728900 5.94E-58 dispersed
Csa06g02812 Csa-Chr6:24539677 Csa04g01808 Csa-Chr4:17728900 3.24E-71 dispersed
Csa04g01808 Csa-Chr4:17728900 Csa04g01463 Csa-Chr4:14463477 2.13E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01808 - - csv:101216002 724.546