Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g01808 | ATGGGTGCTGAAACAGGGCTTGCAATGTTTTGTGGAATGATTCAAAAAATAAAACCCTACCTGGCTATGGTTTCCTTGCAATTTGGATATGCAGGGATGTATATTATCACCATGCTTTGTCTTAAGAAAGGGATGAACCATTACGTTCTCGCCGTCTATCGACACGTCGTTGCCACCATTGTCATCACCCCCTTTGCTATCGTCCTCGAAAGAAAGATAAGGCCGAAGATGACATTAGGAATCTTTGCACGAGTCTTGCTCCTTGGATTTCTCGAGCCTGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTTACCTCAGCAACGTTTACCTCTGTCACCATCAATATTCTACCTGCAGTGACGTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAACTTCAAGAAGATCCGTAGCATTGCGAAGGTGGCAGGAACATTGGTAACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTTCACGGTCATGGACGACATGCCGCCCACAACAGCAGCAGCAGCGAATCTGCTGACCAGCACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATTGTGGGTTGGTCGGGCTTCTTCATCTTACAATCGTTCACGCTGAGAAAATATCCGGCGGAGCTGTCCTTAACGGCCCTGATATGCGTAGCCGGTGCAGTGGAGGGCTCCATCGTGACGCTTATTATGGAGCGTGACTTTACCGTGTGGGTCATCGGCTGGGACTCTCGTCTTCTTGCCGCTGTTTATACTGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGTGTGGTAATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACACCTCTCTGCATGATTATTACCGCCATTCTTGGTTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATAGGAGCAATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGAAAAGCCAAAGACCACATAAATAAATTGACGAATCAAAAAAGCAACGCCGCCACCGAATTACCGATCACCAACGAGCCGGAAACTACCGCCGCCGAGCGTTGTTCTTCAAAAGCTCCACCGGCTTGA | 1125 | 47.38 | MGAETGLAMFCGMIQKIKPYLAMVSLQFGYAGMYIITMLCLKKGMNHYVLAVYRHVVATIVITPFAIVLERKIRPKMTLGIFARVLLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNFKKIRSIAKVAGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHNSSSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGAVEGSIVTLIMERDFTVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHINKLTNQKSNAATELPITNEPETTAAERCSSKAPPA* | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17728900 | 17732349 | - | CsaV3_4G028340.1 | Csa04g01808 | 527418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g01808 | 374 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 53 | 163 | - | - | |
Csa04g01808 | 374 | MobiDBLite | consensus disorder prediction | 350 | 364 | - | - | |
Csa04g01808 | 374 | MobiDBLite | consensus disorder prediction | 350 | 374 | - | - | |
Csa04g01808 | 374 | Pfam | EamA-like transporter family | 31 | 144 | IPR000620 | GO:0016020|GO:0016021 | |
Csa04g01808 | 374 | Pfam | EamA-like transporter family | 193 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
Csa04g01808 | 374 | PANTHER | WAT1-RELATED PROTEIN | 13 | 356 | - | - | |
Csa04g01808 | 374 | PANTHER | WAT1-RELATED PROTEIN | 13 | 356 | IPR030184 | GO:0016021|GO:0022857 | |
Csa04g01808 | 374 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 251 | 335 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00981 | Csa-Chr2:9339464 | Csa04g01808 | Csa-Chr4:17728900 | 1.87E-64 | dispersed | |
Csa02g01074 | Csa-Chr2:10474274 | Csa04g01808 | Csa-Chr4:17728900 | 5.93E-85 | dispersed | |
Csa02g01181 | Csa-Chr2:11574373 | Csa04g01808 | Csa-Chr4:17728900 | 6.96E-139 | dispersed | |
Csa04g01808 | Csa-Chr4:17728900 | Csa04g01903 | Csa-Chr4:18776633 | 5.38E-120 | dispersed | |
Csa05g02916 | Csa-Chr5:29640781 | Csa04g01808 | Csa-Chr4:17728900 | 5.94E-58 | dispersed | |
Csa06g02812 | Csa-Chr6:24539677 | Csa04g01808 | Csa-Chr4:17728900 | 3.24E-71 | dispersed | |
Csa04g01808 | Csa-Chr4:17728900 | Csa04g01463 | Csa-Chr4:14463477 | 2.13E-130 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g01808 | - | - | csv:101216002 | 724.546 |