Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01811 ATGTTGAAGTCCAATGGGCCGCAACGAGAAGCCCAAATCAGCGACGCCGTCATGAATTTTTACCAATCTGGGGGCCCTTCACCACCCGGCAATCGATTCTCTTGGATTTCCATAGGCGTTCCTTCTTCGTCTAAACCTTCGTCCTACTCTGTACTCTCCTCTCTCCGGCGCGCTTCTTTGCTCTCAATTCCATCTCTCTGCTTCAGTATGGCGAAGGAGGTTTATACCAGGGAACACTTACTTTCCCTCTTGCAGGATCTTCAAGTTGATTTTTCCAGGTACGAACATCCTGCTGTATTGACAGTTGAAGCTCAGGCAAAATATGTTGGAAATTTGGGGGGTGGCCTCAGTAAGAATCTGTTTTTGAAGGACAAAAAGAATAGATACTATATTGTTTCTGCATTGGCAGACACCAAAGTGGATCTAAAAGTTCTATCTGTGAGACTTGGTTTGGGTAAAGGTGGTCTGAGAATGGCTCCCGAGGAAGCATTGGGTGAGAAACTTAAGGTGTCCCTGGGCTGTGTTACTCCATTTGCACTCATCAATAAAACAGCACGGGATGTCGCCTTGTTGTTAGACCAGGGATTTAAAGGCCAGGAGTTTTGCTTCTTTCATCCTCTGTCAAACGAAACATCAATATCCATTAATACCAGTAATCTCGACAAGTTCCTTCAATCGATTGGGAGAGACCCTTCATATGTTGACTTGGAGGCTAATCCTTCTGTAGGAAAGGATCAACCCCCAGATCTTGCCGGACTTGTTCCCTCTGTTTCTTCCCTTGTGCCTGATACACCAGAGAAAGTATCTTCTCACCCGGATTCTAATGAAAATCACGGTGTTACTGACAAGAAGTCTAAAGCAGTTGCAGCGAACACAGTCAAACCATCTACCACTGTGAAAGTTGGAAAGGACAAACCTACACCCAAGGTTCAACCAACCTATGCAAATGTGGAAAAATTTGTGGAAGAGATCCTTGATAAGACGTCAGCAATAGTGCTCTCACAGCTGACAGAGGAGACAGTTAATAAACATGGAGAGCATTTGGGAGCCGCGGTGTCAAACAGCATTAAGAGACATCTCAGCTCGGAATTGAACAATCTTTCTATGATATTTAAGAACACAGCATACACAGAAGGGTTCCATGCTGGGTCTTCTCATAAAGTGAAACATCCATGCTGA 1179 44.7 MLKSNGPQREAQISDAVMNFYQSGGPSPPGNRFSWISIGVPSSSKPSSYSVLSSLRRASLLSIPSLCFSMAKEVYTREHLLSLLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSALADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSHPDSNENHGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQPTYANVEKFVEEILDKTSAIVLSQLTEETVNKHGEHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSSHKVKHPC* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17770406 17774508 + CsaV3_4G028370.1 Csa04g01811 527421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01811 392 CDD PrdX_deacylase 77 234 - -
Csa04g01811 392 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 75 389 IPR040285 -
Csa04g01811 392 Pfam Aminoacyl-tRNA editing domain 96 223 IPR007214 GO:0002161
Csa04g01811 392 SUPERFAMILY YbaK/ProRS associated domain 76 236 IPR036754 GO:0002161
Csa04g01811 392 Gene3D - 69 243 IPR036754 GO:0002161
Csa04g01811 392 MobiDBLite consensus disorder prediction 237 289 - -
Csa04g01811 392 MobiDBLite consensus disorder prediction 269 283 - -
Csa04g01811 392 PANTHER PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED 75 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01811 - - K08176 csv:101217512 633.254
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01811 Csa_Chr04 FPKM 1.575758 1.627057 2.566449 4.093156 2.523403 2.63699 2.639446 0.849683 0.734845 2.697667