Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01819 ATGAAACCCAAGAACCTTCATTATCATGCCTATGATGCTAATGGTTACCAGTGTGATGGGTCTCAGAGCAGTGGGAGTAGCTCTCCTAGTCCTCCTCACTCGCCTCCGCGTTATGCTTCCTCTAAGTGCCGACGAAAGCCACGCTCCAAACCCCATTATTACCAACCACTGCGGGAACTATTTGTCGGTGCCTTCACTTTCAGGTTTAGCTTTAGACAAATGGTGCTTCTTCCTCTGCTTTATATCTCTGGTTTGATCATGTGCGTTGGCCCTTTCTCTTCTTTCGTCGGTCAGCCTCCTCCCCCTGGCTCGCTCTATCGTAGCCATCAAATGTATCACCGGCTCCAGCGCCATATTCAATCTGATAATTCCTCTGCAGCAATTCAGTTGTCATCAGTTTGGAAATACAAAAGGCTGAAGGAGAGAAAGCCATGTTCAAATTCAACAACTTCCCGATTGCATTCAGAATCCAATGACCCTACTACTTACCTGATTGTTGATGCTAATGGTGGACTCAACCAACAACGATCTGCAATCTGCAATGCAGTGGCTGTGGCAGGGCTTCTAAATGCCATTCTAGTTATTCCCCGCTTTGAGTTCCACAATGTCTGGAAGGATTCAAGTAAGTTCGGTGATATTTATGATGAGGATCACTTCATAGCTGCCCTTGATGGTCATGTTAAAGTTGTTAAAGAGCTACCTGAGGCTTTAATGCAAAGATATGATTACAACATTTCTAATATACCAAACTTTCACGTTCAAGCTTGGTCTACTGCTAATTATTATTTGGCAGAAGTTCTACCTGTCTTGCGAAGGGAAGGGGTAATTCGAGTGTCCCCTTTTGCCAACAGATTGGCCATGAATATTCCACCTGAAATTCAATTCTTAAGATGCTTGGCTAATTATGAAGCACTGAGGTTCTCTTCTCCTATTCTGACTTTTGCACATAAGCTAGTTAGCCGGATGATTAAAAAGAGTTCGGGAGATGATGGGAAGTATGTTTCCATCCACCTACGATTTGAGGAGGACATGGTAGCTTTCTCCTGTTGTGTATATGATGGAGGTGAAGCTGAAAAGGTTGAAATGGATTCAATTCGAGAAAAAGGATGGAAGCAGAAGTTCAAACTCAAAACCCATCTCATTTCGCCTAGTCTTAACCGAATTAATGGAAAATGCCCTTTAACCCCCTTGGAGGTTGGAATGATGTTGCGCGGTATGGGATTTGATAACCACACTTCAATTTATTTGGCTTCGGGTAAGTTATACCAGGCAGAGAGATATTTAGCTCCACTGCAGGAAATGTTTCCTCTTTTGCATACAAAGGAATCACTTGCTACGCCAGATGAACTTGCTCCGTTTATGGAATATTCTTCAAGATTGGCTGCTTTGGATTATATGGTATCCTTGTTAAGTGAGGTCTTTGTAACCACTCAGGGAGGTAATTTTCCACACTTCCTAATGGGGCACAGACGGTTCCTTTACGATGGACATGCCAAGACAATCAAGCCTGATAAACGAAAGCTTGCTATTTTAATGGATGATAGAATAAAATTGAGCTGGAAAGAATTCAAGGAACAAATGGGCGTAATGCTTTCGGAAAGCGACCGAAAGGGGCTAATGGTACCTCGAATCAGACGATTCAACAGAAAAACGTCTGTCTATACTTACCCTTTACCCGAATGCAGATGTTTGCAAAAGTCCCACAATATCAACTCCACAGACGACAATTATATACTCGATCAGCTCTTCGGATCCATGAGATAG 1764 42.91 MKPKNLHYHAYDANGYQCDGSQSSGSSSPSPPHSPPRYASSKCRRKPRSKPHYYQPLRELFVGAFTFRFSFRQMVLLPLLYISGLIMCVGPFSSFVGQPPPPGSLYRSHQMYHRLQRHIQSDNSSAAIQLSSVWKYKRLKERKPCSNSTTSRLHSESNDPTTYLIVDANGGLNQQRSAICNAVAVAGLLNAILVIPRFEFHNVWKDSSKFGDIYDEDHFIAALDGHVKVVKELPEALMQRYDYNISNIPNFHVQAWSTANYYLAEVLPVLRREGVIRVSPFANRLAMNIPPEIQFLRCLANYEALRFSSPILTFAHKLVSRMIKKSSGDDGKYVSIHLRFEEDMVAFSCCVYDGGEAEKVEMDSIREKGWKQKFKLKTHLISPSLNRINGKCPLTPLEVGMMLRGMGFDNHTSIYLASGKLYQAERYLAPLQEMFPLLHTKESLATPDELAPFMEYSSRLAALDYMVSLLSEVFVTTQGGNFPHFLMGHRRFLYDGHAKTIKPDKRKLAILMDDRIKLSWKEFKEQMGVMLSESDRKGLMVPRIRRFNRKTSVYTYPLPECRCLQKSHNINSTDDNYILDQLFGSMR* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17843195 17848806 + CsaV3_4G028450.1 Csa04g01819 527429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01819 587 PANTHER - 25 571 IPR024709 -
Csa04g01819 587 PIRSF UCP009360 38 567 IPR024709 -
Csa04g01819 587 Pfam GDP-fucose protein O-fucosyltransferase 163 492 IPR019378 -
Csa04g01819 587 CDD O-FucT_plant 163 500 IPR024709 -
Csa04g01819 587 PANTHER O-FUCOSYLTRANSFERASE 10-RELATED 25 571 - -
Csa04g01819 587 MobiDBLite consensus disorder prediction 13 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01819 - - - csv:101214561 1178.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01819 Csa-Chr4:17843195 Csa05g02022 Csa-Chr5:23594214 0 dispersed
Csa04g01819 Csa-Chr4:17843195 Csa02g02168 Csa-Chr2:19542553 5.06E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g312 . Blo12g00682 . Bda03g00524 . Bpe04g00478 . . . . Cma01g01403 Cma09g00811 . . . Cpe06g00645 Cpe07g00146 . . . . . . . Cla08g01128 Cam08g1584 Cec08g1154 Cco08g1280 Clacu08g1284 . Cre08g1066 Cone4ag1380 Cone7ag1551 Cone17ag1267 . Lsi04g02374 Csa04g01819 . . . . . . . . . . . Cmo01g01453 Cmo09g00804 . . . Car09g00726 . Cpe02g00539 Bhi09g02645 . . . Hepe01g2262 Mch11g0812 . Cla11g01520 Cam11g1580 Cec11g1609 Cco11g1608 Clacu11g1736 Cmu11g1554 Cre11g1972 Lsi08g00985 . Chy07g00668 Cme07g00876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009726 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01819 Csa_Chr04 FPKM 24.593119 24.83812 22.793257 23.714849 13.23869 12.078263 14.506036 21.657673 20.314087 23.056261