Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01830 ATGTTTTGTCCTTTCCAAGTCAGTTTCGTATATAAAGCTTCTCTCCCTCAATTTGTCTTGCTCAGAAACCTTACACTTCTGTTTCTTACATTAAACTGGAGGCCACAAATCCTTCCATCTCTTCCCATGGCTACCTCAATCAACAATCCCCAATTCTCTCATTTGGATTCTTTCTCTAACCTCCGCTCCGACTCATCACTTCGTTGTTGCAATTTCCCTTCCATTCCCACCAATCATCTCCTAATCAACAACCACGACGACAATGAAGATTTCTCTAGTGACGATGACAACGACAATGACTCTGATTTTACCCATTTGATTCGTAAAGGGATTCAAGAATTGGAACCCTCCATTTTGGACCCCAGAGATTTCGGAACGGCTGATTGTTGGATCCACCGAAATGAATCATTGGTTCGTCTTACCGGTAAACATCCCTTCAATTCCGAGCCGCCGTTATCTCGTTTGATGCACCATGGGTTCATCACTCCCGTCCCTCTCCATTACGTTCGTAACCACGGTCCGGTACCCAAGGCTAAGTGGGAGGATTGGACCGTTGAGGTTTGCGGTTTAGTAAAAAAACCAACCCGGTTCACTATGAATCAACTCGTAAGCGATTTCAGCAGCCGTGAGTTTCCTGTCACACTCGTCTGCGCCGGAAACCGCCGTAGGGAGCACAATATGGTTAAAAAAACCATTGGCTTTAACTGGGGTGCAGGCGGGACTTCCACCTCGGTCTGGCGAGGGGTTCCACTACGAGACGTTCTGAAACGGTGTGGTATCTTCAGTCGTAAAAAAGGAGCACTCAATGTCTGCTTTGAAGGAGCTGAATGTCTGCCCGGCGGCGGTGGGTCCAAGTACGGTACTAGTATCAGAAAGGAAATAGCCATGGACCCAGCTAGAGATATAATTTTAGCCTATATGCAAAACGGGGACGTACTGTCACCGGACCATGGTTTTCCGGTGCGGGTTATCATCCCCGGTTTCATCGGTGGAAGGATGGTGAAATGGGTAAAACGCATTATCGTAACAACACAAGAATCCGATAGCTATTACCATTATAGAGACAACAAAGTCCTCCCTTCCCATGTCGATGAAGAATTAGCAAACGCAGAAGCTTGGTGGTATAAGCCGGAGTGTATTATTACTGAGTTGAACATAAACTCGGTGATAACGACCCCATGTCATGAGGAAATCTTGCCGATAAATTCATGGACGACACAACGGCCATACACGTTGAGGGGATATGCATATTCTGGAGGAGGAAAGAAAGTGACACGGGTGGAGGTGACTTTAGATGGTGGTGAGTCGTGGCATGTTTGCGATTTGGACTGTCCTGAGAAAGCTACAAAATACGGCAAATATTGGTGTTGGTGTTTTTGGTCACTGGAAGTTGAAGTTCTTGACTTACTTGCTGCTAAAGAAATTGCAGTACGCGCTTGGGATGAAACTTTCAACACTCAACCTGAAAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGTTGGTTTCAAGTGAAAACCAACATGTGTAAACCGCATAAAGGAGAGATCGGAATCGTTTTTGAACACCCAACTGTACCCGGCAACCAATCCGGCGGATGGATGGGTAAAGAAAGACATCTCGAAATATCCACCGAATCCAATCAAACCATGAAGAAGAGTATTTCGTCTCCCTTCATCAACACAACCTCAAAGACTTACTCCATCTCTGACGTTCAAAAGCACAACTCAGACCAATCCGCCTGGATCGTCGTACACGGCCATGTTTACGACTGCACCCGTTTCCTCAAAGACCACCCTGGGGGTATGGACAGCATTCTCATCAATGCCGGTACCGATTGTACGGAGGAATTCGACGCCATTCACTCGGACAAAGCCAAAAAAATGCTAGAGGAATACAGAATCGGCGAGTTGATCACCACCGGCTACATATCGGATTCATCGCCTAACAACTCCATCCATGGGGATTCTTTTAGTTCTAATCCTCACTTGGCTCCAATAACAGAAACGAGGCGCGTGGCTTTAATCCCGCGTGAAAAAATTCGCTGCAAATTAGTTTCCAAAACGTCAATCTCACACGACGTCAGACGGTTCAGAATCGGCTTGCCTTTAGACGATCAAATCCTGGGATTACCTGTAGGGAAACACATATTCCTATGTGCAAATATAGACGGTAAGCTCTGTATGAGGGCCTACACACCAACCACCTGCATCAATCAAGTCGGCTATTTCGACTTAGTGGTCAAAATCTATTTCAAAAACGTGAACCCAAAATTTCCAAACGGCGGACTCATGTCTCAGCATTTGGAGTCTCTCCCACTTGGTTCCGAACTAGAAATCAAAGGTCCGTTAGGCCACATCGAATACACCGGAAACGGAAATTTCGTGGTGGACGGTAGAGTAAAGAAGGCAAAGAAGCTAGCAATGTTGGCCGGCGGAACGGGAATAACGCCGATATATCAAGTGGCGCAGGCGGTGCTGAAGGATCCTGAGGATGAAACAGAGATGTTTTTGGTGTATGCGAACAGAACGGAAAATGATATTCTGTTGAAGGATGAGTTGGATGAATGGAGTAAAAGGGATAAGAGGTTTAAAGTGTGGTACGTTGTGAATGAGAGTGTAAGGGAAGGGTGGGAATATAGTGTGGGAGTGGTGAGGGAGAGCATTATGAGGGAGCATCTTCCAGAAGCTTCGCCGGAAACAATGGCGTTGGCTTGTGGACCACCGCCAATGATTAAGTTTGCTGTGAAACCCAGTTTGGAGAAGATGAATTACGACACTACTAACTCGTTGTTGGTGTTTTAG 2808 46.05 MFCPFQVSFVYKASLPQFVLLRNLTLLFLTLNWRPQILPSLPMATSINNPQFSHLDSFSNLRSDSSLRCCNFPSIPTNHLLINNHDDNEDFSSDDDNDNDSDFTHLIRKGIQELEPSILDPRDFGTADCWIHRNESLVRLTGKHPFNSEPPLSRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEVCGLVKKPTRFTMNQLVSDFSSREFPVTLVCAGNRRREHNMVKKTIGFNWGAGGTSTSVWRGVPLRDVLKRCGIFSRKKGALNVCFEGAECLPGGGGSKYGTSIRKEIAMDPARDIILAYMQNGDVLSPDHGFPVRVIIPGFIGGRMVKWVKRIIVTTQESDSYYHYRDNKVLPSHVDEELANAEAWWYKPECIITELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGESWHVCDLDCPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFQVKTNMCKPHKGEIGIVFEHPTVPGNQSGGWMGKERHLEISTESNQTMKKSISSPFINTTSKTYSISDVQKHNSDQSAWIVVHGHVYDCTRFLKDHPGGMDSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYISDSSPNNSIHGDSFSSNPHLAPITETRRVALIPREKIRCKLVSKTSISHDVRRFRIGLPLDDQILGLPVGKHIFLCANIDGKLCMRAYTPTTCINQVGYFDLVVKIYFKNVNPKFPNGGLMSQHLESLPLGSELEIKGPLGHIEYTGNGNFVVDGRVKKAKKLAMLAGGTGITPIYQVAQAVLKDPEDETEMFLVYANRTENDILLKDELDEWSKRDKRFKVWYVVNESVREGWEYSVGVVRESIMREHLPEASPETMALACGPPPMIKFAVKPSLEKMNYDTTNSLLVF* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17957732 17961707 - CsaV3_4G028560.1 Csa04g01830 527440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01830 935 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 779 929 IPR039261 -
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 138 152 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 453 463 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 213 224 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 239 254 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 297 313 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 314 327 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 160 176 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 224 236 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 381 393 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 491 504 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 478 490 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 330 343 IPR008335 GO:0016491
Csa04g01830 935 PRINTS Eukaryotic molybdopterin domain signature 412 426 IPR008335 GO:0016491
Csa04g01830 935 Gene3D - 383 559 - -
Csa04g01830 935 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 563 644 IPR036400 -
Csa04g01830 935 Pfam Oxidoreductase NAD-binding domain 810 917 IPR001433 GO:0016491
Csa04g01830 935 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 679 791 IPR017927 GO:0016491
Csa04g01830 935 Pfam Oxidoreductase FAD-binding domain 684 790 IPR008333 -
Csa04g01830 935 Gene3D - 561 641 IPR036400 -
Csa04g01830 935 SUPERFAMILY Riboflavin synthase domain-like 671 793 IPR017938 -
Csa04g01830 935 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 120 381 IPR036374 -
Csa04g01830 935 CDD cyt_b5_reduct_like 684 927 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 731 738 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 776 790 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 903 911 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 809 828 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 847 858 - -
Csa04g01830 935 PRINTS Cytochrome B5 reductase signature 710 721 - -
Csa04g01830 935 Gene3D Translation factors 672 785 - -
Csa04g01830 935 PRINTS Cytochrome B5 signature 615 622 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 600 614 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 590 600 IPR001199 -
Csa04g01830 935 PRINTS Cytochrome B5 signature 627 639 IPR001199 -
Csa04g01830 935 PANTHER NADH-CYTOCHROME B5 REDUCTASE 98 935 IPR001834 GO:0016491
Csa04g01830 935 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 565 640 IPR001199 -
Csa04g01830 935 Pfam Oxidoreductase molybdopterin binding domain 172 351 IPR000572 -
Csa04g01830 935 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 189 224 IPR022407 GO:0043546
Csa04g01830 935 Pfam Mo-co oxidoreductase dimerisation domain 380 509 IPR005066 GO:0016491|GO:0030151
Csa04g01830 935 Gene3D - 786 935 IPR039261 -
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 835 844 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 903 911 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 847 858 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 731 738 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 599 609 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 809 828 IPR001709 GO:0016491
Csa04g01830 935 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 879 895 IPR001709 GO:0016491
Csa04g01830 935 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 596 603 IPR018506 GO:0020037
Csa04g01830 935 PANTHER NITRATE REDUCTASE 98 935 - -
Csa04g01830 935 PIRSF Nitr_rd_NADH 56 934 IPR012137 GO:0006809|GO:0042128|GO:0050464
Csa04g01830 935 Gene3D - 125 373 IPR036374 -
Csa04g01830 935 SUPERFAMILY E set domains 383 508 IPR014756 -
Csa04g01830 935 CDD eukary_NR_Moco 123 508 - -
Csa04g01830 935 SMART Cyt_b5_2 568 640 IPR001199 -
Csa04g01830 935 Pfam Cytochrome b5-like Heme/Steroid binding domain 571 639 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01830 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 1800.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g03663 Csa04g01830 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02595 Csa-Chr2:22592219 Csa04g01830 Csa-Chr4:17957732 3.90E-59 dispersed
Csa04g01830 Csa-Chr4:17957732 Csa05g01516 Csa-Chr5:17677296 0 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa04g01830 Csa-Chr4:17957732 2.23E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01830 Csa_Chr04 FPKM 50.039772 53.761063 38.374271 39.54393 55.069412 51.569996 55.558643 53.326733 53.945145 52.043816