Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01832 ATGGAAAGAAGTGAACCTACATTAGTTCCAGAGTGGTTGAGAAGCTCTGGAAGTCTTTCTGGGAGTGGGATTGCTCAACAATTTGCATCGTCTTCTTCTCACTCAGATATTTCTTCTCAAGGTCATTACTCGAGGAGTAGAACATCAAAGAGCATTAGTGATATAGATAAACCTCATTTTGATTTCTTGGATTGGTCATCTTCATCAAGCACGAGGAGGAGTTCTAGTAATGGCTCTGGAAAGAATGCTTATAGTAATTTTAATAGGAATCATCGTGATAGAGACCGGGAGAAGGAGAAAGATATGTCAAATCATGGGGACTCCTGGGGTTACGACTTTTCTAGTCCTCTGGTAAATGTATTTTCCAGTAGAGCAGAGAAGGAAACCCTGCGACGTTCTCATTCAATGGTGTCTAGGAAGCAAGGTGATTTATTTCCTCAAAGAGTTGCTGTCGACTTGAAAAGTGGAGGCTATAATCACAAGGCTAACAGTAATGGCTTTCATTTAGGAAGTACCATTAATGGTATCACTGATAAGGCTGTTTTCGACAAGGATTTTCCATCACTTGGATCAGAAGAAAGGCAAGGAGGACCAGACGTAGGAAGAGTATCGTCTCCTGGCTTGACCACATGTGTTCAGAGCTTGCCCATTGGAAGTTCAACTTTGATTGGTAGGGAAGGATGGACATCAGCTTTGGCTGAGGTGCCAACTACAGTCACGGGCAGTCCGGCTGCTCCATCATCTATTCAACAGACTGCCAATTCTGGATTGGGATCTCCAAATGCTACAACTCCACGTAAGATGGCTGAAGCTTTAACACAGGCACCAACAAGAGGTCGTGTTACTTCTCAGTCAACAGAGTTATCTGTCAAGACACAGAGGCTTGAGGAATTGGCCATTAAGCAGTCCAGGCAGTTAATCCCAGTAACGCCATCAATGCCCAAAGTTTCTGTTCTTAGTACTTTTGAAAAATCTAAGTCCAAAGGAGCATCCAGAACTGCTGAAATGAATGTGCCTGGCAAGGGCGGTCAACAACAGCTCTCTATGATGCAACATAATAGTCAGCCTCTTCGAGGTGGACAAGTCAAGTCCGATTCTCCAAAGACCACTCATGGAAAATTTCTGGTTCTCAAACCGGTATGGGAGAATGGCGTGTTAAAGGATGGCTCAAATCCTATTAATAACGTTAACAGTAGAACTGCAAATTCCCAGCCTTCTTCTGTTGCCTCTTCAGCAACATCTAACACTTCAAGGAACCAAAACAACCTGACTCCTTCCTCCTCTCTGGAGCGAAAGGTAGCTGCATTGGATCTGAAATCAGGATCCACTTTGGAAAGGAGACCCCCTTCTGCTCAATCACAAAGCAGGAGTGATTTCTTCAATCTCATAAAAAAAAAGACTTTGGTGAATGGTTCTACTTGTTTACAAGATTCGGGTATCTGTACATCTCCTATCAAGGAAAAATCTGGTATAGCGAATGGGGAAGTGGTTAGTGCTGCAGTGCATCCTTCTGCTGTTACTGATGATGAGGTAGCTAGCAATGGCGATACCTCTGAAGAGGTTCAGAGGTTTTCTGAGGTTGTGAATAAGAGTTTGAGCCCTAACAAAGCATTATGTACAGACGAGGAAGAGGCTGCATTTCTTCGTTCTCTTGGATGGGAAGAAAATTCAGGAGAGGATGAAGGACTAACGGAGGAGGAGATTAATGCTTTTTATCAGCAGTACATGAACCTGAAGCCATCTTTGAAGCCGATTAGATGTAAGTTACCAGAATCCTCCAGTGCTGTCTGA 1791 43.5 MERSEPTLVPEWLRSSGSLSGSGIAQQFASSSSHSDISSQGHYSRSRTSKSISDIDKPHFDFLDWSSSSSTRRSSSNGSGKNAYSNFNRNHRDRDREKEKDMSNHGDSWGYDFSSPLVNVFSSRAEKETLRRSHSMVSRKQGDLFPQRVAVDLKSGGYNHKANSNGFHLGSTINGITDKAVFDKDFPSLGSEERQGGPDVGRVSSPGLTTCVQSLPIGSSTLIGREGWTSALAEVPTTVTGSPAAPSSIQQTANSGLGSPNATTPRKMAEALTQAPTRGRVTSQSTELSVKTQRLEELAIKQSRQLIPVTPSMPKVSVLSTFEKSKSKGASRTAEMNVPGKGGQQQLSMMQHNSQPLRGGQVKSDSPKTTHGKFLVLKPVWENGVLKDGSNPINNVNSRTANSQPSSVASSATSNTSRNQNNLTPSSSLERKVAALDLKSGSTLERRPPSAQSQSRSDFFNLIKKKTLVNGSTCLQDSGICTSPIKEKSGIANGEVVSAAVHPSAVTDDEVASNGDTSEEVQRFSEVVNKSLSPNKALCTDEEEAAFLRSLGWEENSGEDEGLTEEEINAFYQQYMNLKPSLKPIRCKLPESSSAV* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17973440 17977861 - CsaV3_4G028580.1 Csa04g01832 527442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01832 596 MobiDBLite consensus disorder prediction 389 429 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 63 86 - -
Csa04g01832 596 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1 583 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 322 346 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 87 106 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 389 430 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 11 48 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 1 108 - -
Csa04g01832 596 MobiDBLite consensus disorder prediction 239 264 - -
Csa04g01832 596 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01832 - - - csv:101213356 1135.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01832 Csa-Chr4:17973440 Csa05g01529 Csa-Chr5:17853005 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g330 . . . . Bpe02g00082 . . Bma01g02637 Cmo04g02433 Cmo15g00734 Cma01g01407 Cma09g00662 . . . Cpe06g00518 . . . . . . . . . . . . . . . . . . . Lsi04g02363 Csa04g01832 . . Blo17g00198 Blo18g00201 Bda11g00747 Bda13g01502 Bpe02g01618 Bpe14g00363 Bma01g00845 Bma02g00242 . Cmo01g01457 Cmo09g00647 . . Car04g02246 Car15g00660 Cpe01g02020 Cpe02g00535 Bhi09g02636 . . . . . . Cla11g01513 Cam11g1573 Cec11g1602 Cco11g1600 Clacu11g1728 Cmu11g1547 Cre11g1963 . . Chy07g00685 Cme07g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006749 0 4 0 0 0 0 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 7 3 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01832 Csa_Chr04 FPKM 29.236168 34.483536 137.971786 128.893112 16.890261 18.337889 15.664397 186.391296 186.047836 173.029434