Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01840 ATGGAAAGCTTGATGAACAAGATTCGAAAATTGGACGCCTATCCCAAAATCAGCGAAGATTTTTACAACCGTACACTCTCCGGTGGATTCATCACTATCGCTTCCTCCATTATAATGTTTCTCCTCTTCTTCTCCGAGCTTCGTTTGTATGTCCATACTGCAACAGAAACAAAGCTTATAGTTGATACTTCAAGAGGAGAACACTTACGCATCAATTTTGATGTAACATTTCCTGCACTTCCATGTTCTGTTCTCAGTCTTCATGCTATGGACATTAGTGGAGAGCAACACCTTGATGTGAAACATGATATTGTCAAGAAAAGAATAGATTACCAGGGCAATGTAATAGATTCAAGACCAGATGGTATTGGGTCCACTGAGATTGAAAGGCCTTTACAGAAGCATGGTGGCAGACTCAAGCAAAATGAGACGTATTGTGGTTCCTGCTATGGGGCTTCAGGTGAGGATTGTTGTAACTCTTGTCAAGATGTGCGTGAAGCTTATCATAGGAAAGGTTGGGCTCTGTCTCATCCAGATCTTATTGACCAGTGCAAACGAGAAGGTTTTTTTCAAAGGGTGAAAAATGAAGAGGGTGAAGGATGCAACATATATGGGTTCTTGGAAGTTAATAAGGTGGCTGGAAATTTTCACTTTGCACCCGGAAGAGGTTTTCAACTATCGTACTTCCAGATTCATAATCCATTAGCATCATTTCAGTGGGATGCTTTTAATATAAGCCACAGAATTAACAGATTAACTTTTGGAGATGATTTTCCAGGTGTTGTAAATCCTCTTGATGGTGTGCAATGGAATCAAGGAACGCTCAGTGGCATGTTCCAATATTTTATCAAGGTTGTGCCTACGGTTTACAAGGCTGTGAATGGAAAGGCTATTAAGTCAAATCAGTTCTCTGTAACTCAACACTTGAGGGGCATAGATGGAGAAAGCTTCCAGGCTCTTCATGGAGTTTTTTTCTTCTATGATCTGTCTCCCATAAAGGTGACATTCACAGAGGAGCACATCTCCTTCTTTCACTTTTTAACAAATGTATGCGCTATAGTTGGAGGAGTTTTTACTATTTCGGGGATACTAGACTCCATTATATATCATGGTCAAAAGGCAATAAAAAAGAAGATGGCACTTGGCAAATTTACTTGA 1158 39.98 MESLMNKIRKLDAYPKISEDFYNRTLSGGFITIASSIIMFLLFFSELRLYVHTATETKLIVDTSRGEHLRINFDVTFPALPCSVLSLHAMDISGEQHLDVKHDIVKKRIDYQGNVIDSRPDGIGSTEIERPLQKHGGRLKQNETYCGSCYGASGEDCCNSCQDVREAYHRKGWALSHPDLIDQCKREGFFQRVKNEEGEGCNIYGFLEVNKVAGNFHFAPGRGFQLSYFQIHNPLASFQWDAFNISHRINRLTFGDDFPGVVNPLDGVQWNQGTLSGMFQYFIKVVPTVYKAVNGKAIKSNQFSVTQHLRGIDGESFQALHGVFFFYDLSPIKVTFTEEHISFFHFLTNVCAIVGGVFTISGILDSIIYHGQKAIKKKMALGKFT* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18026537 18033948 + CsaV3_4G028660.1 Csa04g01840 527450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01840 385 Pfam Endoplasmic reticulum vesicle transporter 149 365 IPR012936 -
Csa04g01840 385 PANTHER ENDOPLASMIC RETICULUM VESICLE TRANSPORTER 1 385 - -
Csa04g01840 385 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Csa04g01840 385 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 385 IPR045888 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01840 K20367 ERGIC3, ERV46; endoplasmic reticulum-Golgi intermediate compartment protein 3 - csv:101214805 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01688 Csa-Chr1:13269193 Csa04g01840 Csa-Chr4:18026537 0 dispersed
Csa04g00936 Csa-Chr4:6996691 Csa04g01840 Csa-Chr4:18026537 0 dispersed
Csa04g01840 Csa-Chr4:18026537 Csa05g01607 Csa-Chr5:19023595 5.97E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g388 . . Bda01g00878 . . . . . Cmo05g00513 Cmo15g00776 . . . Car12g00138 Sed04g0132 . Cpe07g00125 Bhi04g00747 Tan02g2376 Cmetu03g1358 . Hepe10g0514 . Lcy13g1577 Cla08g01097 Cam08g1551 Cec08g1124 Cco08g1251 Clacu08g1253 . Cre08g1035 . . Cone17ag1229 Cone20ag0498 . Csa04g01840 . Cme03g01511 . Blo18g00137 . . Bpe02g01115 . Bma01g01423 . . . . Cma12g00149 Cma05g00490 Car05g00439 Car15g00700 Cpe11g00429 . . . . . . . . . . . . . . . Lsi08g00954 . Chy03g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000760 2 3 2 2 2 2 5 3 3 3 3 3 5 3 3 4 3 3 5 3 3 3 3 3 3 2 3 5 4 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01840 Csa_Chr04 FPKM 13.646784 15.533723 25.344526 28.689735 20.10504 18.02368 17.36968 32.697449 33.61615 30.990686