Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01841 ATGGCAGCTGCCATGGATTTCTATAATGAAGGATCGCAAACAGACCACTTCGGTGGCGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTTCTTCCTCTCTCTCTACTTTCCCTTCTTCTTCTTCACCAACACCTTATCTCTCTCCTCATTATTCTTCTTCCTTCAACACTCACCTCAACTTCTCTCACTCTGCTTCTCAACAGTCCAATTTGTACCCTAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCAGTCACAATTGGACCCCATCAGTTATCATCATCTCAAATCCCTCATTCCCAACCTCAAAACAACCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGCCAACAAAACCATCAACCACCATCCTCCTCTGAACAACCGCCCAGCTTCCTCGCCCCCAAGCCGATCCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACCAAGCTTTACAGAGGGGTCAGGCAACGGCACTGGGGAAAATGGGTGGCCGAGATCCGACTCCCAAGAAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTTAATTTCCCCAACCTCAAGCACCAAGGTTCCTGTGTTGAAGGCGAATTCGGCGAGTACAGACCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCGCAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAAAAGTCAAAGTCCCAATCTTGCTCAATGGCTGAGGAAACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCGCGGGCTGTCACAGAGAGCGACGGGTCGGAAGCGTCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGATGCTATGGGATCAGAGTCAACCTTGGGAGAATTCAATGCTAGAAAAATATCCATCTGAGATCGATTGGGCATCGATCTTACCTTAA 1077 48.28 MAAAMDFYNEGSQTDHFGGELMEAIVPFIKVASSSSSSLSTFPSSSSPTPYLSPHYSSSFNTHLNFSHSASQQSNLYPNGCSTSMNPVFSDGFSTQNLIGFEQPVTIGPHQLSSSQIPHSQPQNNLLQNQTPLAFAWGQQNHQPPSSSEQPPSFLAPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQAICDNLAKPQKQGNSKKPVTAAKKSKSQSCSMAEETAAVKVENSSSRAVTESDGSEASSPLSDLTFPDFTEMLWDQSQPWENSMLEKYPSEIDWASILP* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18031783 18032859 - CsaV3_4G028670.1 Csa04g01841 527451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01841 358 MobiDBLite consensus disorder prediction 138 171 - -
Csa04g01841 358 MobiDBLite consensus disorder prediction 292 322 - -
Csa04g01841 358 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 356 - -
Csa04g01841 358 CDD AP2 173 233 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 SUPERFAMILY DNA-binding domain 174 231 IPR016177 GO:0003677
Csa04g01841 358 MobiDBLite consensus disorder prediction 268 287 - -
Csa04g01841 358 Pfam AP2 domain 175 223 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 Gene3D AP2/ERF domain 174 232 IPR036955 GO:0003700|GO:0006355
Csa04g01841 358 SMART rav1_2 174 237 IPR001471 GO:0003700|GO:0006355
Csa04g01841 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01841 K09286 EREBP; EREBP-like factor - csv:101214560 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01689 Csa-Chr1:13278059 Csa04g01841 Csa-Chr4:18031783 1.43E-107 dispersed
Csa02g00938 Csa-Chr2:8854159 Csa04g01841 Csa-Chr4:18031783 3.62E-36 dispersed
Csa04g00651 Csa-Chr4:4349086 Csa04g01841 Csa-Chr4:18031783 3.44E-42 dispersed
Csa04g01841 Csa-Chr4:18031783 Csa06g03172 Csa-Chr6:27003092 5.43E-68 dispersed
Csa04g01841 Csa-Chr4:18031783 Csa06g01107 Csa-Chr6:9141584 4.43E-33 transposed
Csa04g01841 Csa-Chr4:18031783 Csa07g00434 Csa-Chr7:3130847 4.68E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31586 PF00847 AP2 2.70E-15 CL0081 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01841 Csa_Chr04 FPKM 0.286192 0.0 70.791847 74.818657 48.15073 44.147427 44.08424 0.318077 0.200604 0.212178