Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01842 ATGGAAAATTTTGGAAACGACTTCCTTGATTATCTTGTTGATGACGATTATTACGACGTGGCTAATTTCGATGACGACTCCTCTTTTGGTGATGACGAAACGCAGAGGAGTAGCGATGTAGATTCTCTGGACTCTGATTTCGAAGATGATTTTGAGATGAGCAAGTCAAGAACTGATACGTCTGCATTGGAAGCTAGAAATGGGAAAGATATACAAGGTATACCTTGGGAGAGGCTTCATTTTACAAGGGAAAAGTGCCGTGAGACACGTTTGAAACAGTACAAAAACTATGAGAACCTCTCACGCCCTCGCCAAGACCTCGAAAAGGAATGCTTGCAAGTAGAGATGGGACATGCTTTCTATGACTTTCAGTTCAATACCAGACTTGTCAAGTCAACAATTGTGCATTTCCAGCTGAGAAATCTGTTATGGGCAACTTCCAAGCATGATGTATATCTAATGCAGAACTATTCAGTATTGCACTGGTCTTCATTGCTTCGAAGGAGCAAAGAAGTACTAAATGTAGCTAAACCAGTTGTTCCCACTCTGAAACTTCCTGGATTGATGTCTCAGTCACTTTCTAGAGTTCAGATAAGCACCATGGCGGTTAAAGAAAATCTGGTTGTTGCTGGTGGTTTTCAAGGGGAACTTATTTGCAAGTACCTAAATCATCCAGAGGTTGCATTCTGTACAAAGATTACAGCAAATGAGAATGCTATCACTAATGCTGTGGATATTTACCGAGATTCAGTGAGTGGAATAAGGATCATGACGGCAAATAACGATTGCAAAATCAGGATTTACGATGCTGAGTGTTTTTCTTCCCTTGGTTGCTTCTCATTCGACTGGTCTGTAAATAACACATCCGTCAGTCCAGATGGTAAAATGCTTGCTGTTCTTGGGGACAGTCCAGATTGCTTGATCACTGATGCAAATTCTGGCCGAGCTATTGGATGCCTTCAAGGGCACTTAGACTATTCATTTAGCTCAGCATGGCACCCAAATGGCCATATTCTGGCCACAGGAAACCAAGATACAACCTGTAGGCTATGGGATGTGAGGAAAATGTCGGAGTCCATGGGTGTTCTAAAAGGAAGGATGGGAGCTATAAGAGCTTTAAAATTCACATCGGATGGTAGATTTTTGGCTATGGCTGAGCCAGCAGACTTCGTCCATATCTTTGATACCCAATCTGGGTACGTTGAAGGCCAAGAGATTGATATGTTTGGAGAAATAGCAGGCATATCCTTCAGCCCTGATGCTGAATCTCTTTTTGTTGGTGTGTCGGATCGAACCTATGGTAGCTTATTAGAATTCAACAGGAGGCGTGAGAATAGGTATCTGGACTCCATCATTTAG 1359 42.31 MENFGNDFLDYLVDDDYYDVANFDDDSSFGDDETQRSSDVDSLDSDFEDDFEMSKSRTDTSALEARNGKDIQGIPWERLHFTREKCRETRLKQYKNYENLSRPRQDLEKECLQVEMGHAFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVLHWSSLLRRSKEVLNVAKPVVPTLKLPGLMSQSLSRVQISTMAVKENLVVAGGFQGELICKYLNHPEVAFCTKITANENAITNAVDIYRDSVSGIRIMTANNDCKIRIYDAECFSSLGCFSFDWSVNNTSVSPDGKMLAVLGDSPDCLITDANSGRAIGCLQGHLDYSFSSAWHPNGHILATGNQDTTCRLWDVRKMSESMGVLKGRMGAIRALKFTSDGRFLAMAEPADFVHIFDTQSGYVEGQEIDMFGEIAGISFSPDAESLFVGVSDRTYGSLLEFNRRRENRYLDSII* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18051645 18057786 - CsaV3_4G028680.1 Csa04g01842 527452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01842 452 Gene3D - 195 447 IPR015943 GO:0005515
Csa04g01842 452 PANTHER OS03G0386000 PROTEIN 1 451 - -
Csa04g01842 452 SUPERFAMILY WD40 repeat-like 193 432 IPR036322 GO:0005515
Csa04g01842 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 354 - -
Csa04g01842 452 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 451 - -
Csa04g01842 452 Pfam WD domain, G-beta repeat 318 352 IPR001680 GO:0005515
Csa04g01842 452 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Csa04g01842 452 MobiDBLite consensus disorder prediction 24 49 - -
Csa04g01842 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Csa04g01842 452 SMART WD40_4 214 269 IPR001680 GO:0005515
Csa04g01842 452 SMART WD40_4 356 395 IPR001680 GO:0005515
Csa04g01842 452 SMART WD40_4 313 352 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01842 - - - csv:101216836 884.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01690 Csa-Chr1:13292418 Csa04g01842 Csa-Chr4:18051645 0 dispersed
Csa04g00348 Csa-Chr4:2115938 Csa04g01842 Csa-Chr4:18051645 2.18E-172 dispersed
Csa04g01842 Csa-Chr4:18051645 Csa04g02638 Csa-Chr4:25756043 3.29E-07 dispersed
Csa04g01842 Csa-Chr4:18051645 Csa01g02955 Csa-Chr1:25925047 3.59E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01842 Csa_Chr04 FPKM 21.468386 18.862492 24.239738 21.38574 26.037441 29.980381 27.062277 21.830845 19.391584 21.161875