Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01843 ATGGGTTCTCGAGGAAGATTACTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGTGATGGTCTTGTCTTCCAGCCTCAGAAGGCTCAACCACCTTCAAATTCCCATGCGTCCGACTTGTTTCCAGCATCAGGAGGTTCCCAAAGACTATTAAACAATCATGCGTTTTCTCATGCATCTTCTGTCTCAGGTTTTCAGCCTTTTGTTCGGAGTAAACTTGGTTCTAATACTGAAATAGGAGAAGAACAAAAGAAAATATTAGATCAAAATTCAAGGACTACGTTATCATCTAAATTAAGTAATGTTGAGACTGCAGCCCCTGCATTGGTTTCTGGTCCTAGAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCAGATGCGGAGGGTTCTGCTGATATAAATGGGGGCAGTGTTTTGCATAAACAGTTAAAAACTTCACAAGAGAAGGGCCTACTTTCTCCTTCCCGTGATTTTTCTGAGAATAATTTATGCAACCTCAAAATTTCGGATAGCACATTAGACAAAAGTAATAATCATGTTCCTTCAACATCAGATCCGGAACCAAATGATAGGAAAAGTAACAGTATCCTAAATACAGAAAGCAATGTAAAACTCGATACATCTACGGATACTGTGCAGGAAGAAACTGGGTTGCTTCCAAAACAAAGAGAAGTAAAGGGTATTGAAGCAAGTCATGCTCTAAAATGTGCTAATAACCTGGGAAAGAGGAAGATAGATCAACATTTAGAAGCCAAGCTTGGGAAGAAGCGTACTAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGGCCTATGAAAACTTCAACTCCTCGAAGGCAAACATTTCCACCTCCTATAACCACTCGCATTGTGAAGGAAGTTCATAATAATGCAACCCAAGTTAATGAACGTATTGGGGAAAAACAAACTAATAAAGACCAGAAACAAGGTGATGTTTCAAGTCAGGAAGGAGGTATTTCCTTGGAATCTGGTGAATCTAAATTGGACAACAATGGTGATATGAGTTCGGGATTACTTGCTCGGCCAAACAGGCCAAACAATGATGGAGATATCCCACCAGAGGCATCCTTACCTCCAATTCCTAGACAAGGTTCATGGAAGATACCAACAGATTCAAGGTTGCAGAGAAACATGCAGGCCTCCAATCGAAAACCAATTATATCTAATCAAAGTTCTGACCACAAGCAGATAAATAAGAAGCATCTTCCTTCCAAGAAGCAGAATTCTGTTAGTACTTATCAAGACTCATCAGTTGAACGACTTATACGGGAGGTGACAAATGAAAAGTTTTGGCATCACCCAGAGGAAACTGAACTCCAATGTGTTCCTGGTCGGTTTGAGTCTGTGGAAGAATACATCAAAGTGTTTGAACCTTTGTTATTTGAGGAATGCCGGGCTCAACTTTACAGTACGTGGGAGGAACTATCTGAAACATTCTCGAGAGATACACATGCGATGGTCCGTGTCAAGAATATTGATAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTGAACGAGTGTAAATGGTCATTCAAGGAGGGTGATGTGGCAGTTCTTTCGAGTCTTAGGCCTGGATCAGTTAGATCAAAGAGGAACAACAGTATGTCTGTTGAGGATGATGAAGACCAGGAATCTGGTGGACGTGTGGCTGGAACTGTTCGAAGACACATTCCCCTTGACACCCGTGATCCTCCAGGGGCTATTCTTCATTTTTATGTTGGGGACTCGTATGATCCTAGTAGGATTGAAGAAGATCATATACTCAGAAAACTTCAGACAAAGAATGTTTGGTTTTTAACAGTGCTTGGTTCTCTTGCAACAACCCAGCGAGAGTATGTTGCCCTGCATGCATTTCGTCGGCTCAATATGCAGATGCAATCTTCGATCCTTCAGCCTAGCCCTGAGCAATTTCCAAAGTATGAGCAACAATCGCCTGCTATGCCCGAGTGTTTCACGCAAAATTTTGTTGATTATCTGCATAGGACCTTCAATGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACACATACAGCTGCTGGTACGAGCAGTGGGACAGTCAAGAGGCAAGAGCCATGGCCTTTTACACTCGTACAAGGGCCTCCTGGAACAGGTAAGACACATACAGTTTGGGGAATGCTGAATGTTATACATCTGGTTCAATATCAGCACTACTATACTTCGTTGCTCAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATGTCAATACTGGATCCATTGATGAGGTACTCCAAAGCATGGACCAAAATCTTTTACGCACTCTTCCCACATTGTGCCCTAAACCTAGAATGCTAGTTTGTGCACCTTCAAATGCTGCAACAGATGAACTTCTTGCTCGTGTTCTTGATCGGGGGTTCATTGATGGAGAAATGAAGGTGTATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACTCGTGCTGCCCAAGCAGTTTCTGTTGAGCGTAGAACAGAACAACTTTTGGTAAAAAATCGAGACGAAGTTTTAAGATGGATGCACCAGCTAAAAGTTCGTGAAACTCAATTAGGTCAGCAAATGAATAGTCTTCAGAGAGAACTTAATGTTGCTGCAGCTGCTGTTCGCTCTCAAGGTTCTGTTGGTGTTGACCCCGATGTTCTGGTTGCTCGTGACCAAAACAGAGATGCGTTGTTGCAGAACCTTGCTGCTGTGATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGCCTCCTTATTTTAGAAAGTAGATATCGTCCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAACGAGGCTGAGATAGTTTTCACTACAGTATCAAGCAGTGGTCGCAAATTGTTTTCTCGACTTTCTCATGGTTTTGACATGGTAGTCATTGACGAGGCAGCCCAAGCAAGTGAGGTAGCTGTTCTTCCCCCCCTTTCACTTGGTGCAGCAAGGTGTGTGCTCGTTGGAGATCCACAGCAGCTCCCAGCCACGGTTATCAGTAAAGCAGCAGGAACATTGTTGTACAGTAGAAGTCTCTTTGAAAGATTCCAGCAAGCGGGATGTCCCACTATGTTGTTATCGGTGCAATACAGAATGCATCCTCAGATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGACGCCTTACTGACAGTGAAAGTGTAGCTAATTTACCTGATGAGACATACTACAAGGACCCTTTACTTAGACCTTACACTTTCTTTGATATTACACATGGGCGGGAATCTCATAGAGGGGGTTCCGTTTCATATCAAAATATTCATGAAGCGCAATTTTGTCTTCGAATGTATGAACATCTACAAAAAACCGTGAAGTCATCAGGCATAGGTAAAGTTTCAGTTGGTATTATAACACCTTACAAGCTCCAATTGAAATGTCTCCAACGTGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGGAAGGATCTGTACATTAATACTGTTGATGCTTTCCAAGGGCAAGAAAGGGATGTGATTATCATGTCTTGTGTGCGTGCCTCCAACCATGGCGTTGGCTTTGTTGCAGATATTCGTCGAATGAATGTAGCATTGACTCGTGCAAGGAGGGCTCTTTGGGTAATGGGTAATGCTAATGCTTTGATTCAGTCTGATGATTGGGCTGCGTTGATCACTGATGCTAAGGCAAGGAACTGTTACATGGATATGGAATCTCTCCCCAAGGACTTCCTTGGACAGAAGGGGTCTACTCAATCTACTTTGCCTGGTAAGAACTCTTCCAACACTAGGGGTTTGAGATCTGCTCTTCCAAGACATAGGACTCTGGATATACACGTGGAGTCAAGGTCTGGAACACCATCAGAAGATGACGAGAAATCGAATTCTGCTGTAATCACTAGGAATGGGAATTACCGGCCTTCTAAGGCTGCTGTAGAGAATTCCTCAGAAGACTTAGATCAGTCAGGTGACAAATTGAGAGATACTTGGCAGTATGGTATGCAGAAAAGGCAGGGTTCTACTGGGACTGTTGGGAAAAGAGATATTTAA 4122 42.92 MGSRGRLLFDLNEPPVEDNEDSDGLVFQPQKAQPPSNSHASDLFPASGGSQRLLNNHAFSHASSVSGFQPFVRSKLGSNTEIGEEQKKILDQNSRTTLSSKLSNVETAAPALVSGPRDTQSVEREEGEWSDAEGSADINGGSVLHKQLKTSQEKGLLSPSRDFSENNLCNLKISDSTLDKSNNHVPSTSDPEPNDRKSNSILNTESNVKLDTSTDTVQEETGLLPKQREVKGIEASHALKCANNLGKRKIDQHLEAKLGKKRTRQTMFLNLEDVKMAGPMKTSTPRRQTFPPPITTRIVKEVHNNATQVNERIGEKQTNKDQKQGDVSSQEGGISLESGESKLDNNGDMSSGLLARPNRPNNDGDIPPEASLPPIPRQGSWKIPTDSRLQRNMQASNRKPIISNQSSDHKQINKKHLPSKKQNSVSTYQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIKVFEPLLFEECRAQLYSTWEELSETFSRDTHAMVRVKNIDRRERGWYDVIVLPVNECKWSFKEGDVAVLSSLRPGSVRSKRNNSMSVEDDEDQESGGRVAGTVRRHIPLDTRDPPGAILHFYVGDSYDPSRIEEDHILRKLQTKNVWFLTVLGSLATTQREYVALHAFRRLNMQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFVDYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHVNTGSIDEVLQSMDQNLLRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKNRDEVLRWMHQLKVRETQLGQQMNSLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLLILESRYRPNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDETYYKDPLLRPYTFFDITHGRESHRGGSVSYQNIHEAQFCLRMYEHLQKTVKSSGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALITDAKARNCYMDMESLPKDFLGQKGSTQSTLPGKNSSNTRGLRSALPRHRTLDIHVESRSGTPSEDDEKSNSAVITRNGNYRPSKAAVENSSEDLDQSGDKLRDTWQYGMQKRQGSTGTVGKRDI* 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18087368 18098087 + CsaV3_4G028690.1 Csa04g01843 527453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01843 1373 MobiDBLite consensus disorder prediction 544 566 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 1 52 - -
Csa04g01843 1373 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1337 IPR045055 -
Csa04g01843 1373 Coils Coil 866 886 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 1269 1292 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 323 357 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 174 202 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 551 566 - -
Csa04g01843 1373 Pfam AAA domain 1040 1236 IPR041679 -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 29 52 - -
Csa04g01843 1373 CDD SF1_C_Upf1 1064 1253 IPR041679 -
Csa04g01843 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 1265 IPR027417 -
Csa04g01843 1373 CDD DEXXQc_SETX 681 1063 - -
Csa04g01843 1373 Pfam AAA domain 686 1033 IPR041677 GO:0004386
Csa04g01843 1373 MobiDBLite consensus disorder prediction 309 383 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 92 107 - -
Csa04g01843 1373 Gene3D - 603 1061 IPR027417 -
Csa04g01843 1373 Gene3D - 1062 1267 IPR027417 -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 1294 1320 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 1268 1373 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 77 140 - -
Csa04g01843 1373 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1337 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 1321 1341 - -
Csa04g01843 1373 MobiDBLite consensus disorder prediction 395 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01843 - - K10706 csv:101207128 2735.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01843 Csa-Chr4:18087368 Csa07g02274 Csa-Chr7:21176159 1.14E-98 dispersed
Csa05g02833 Csa-Chr5:28772334 Csa04g01843 Csa-Chr4:18087368 1.22E-20 dispersed
Csa04g01843 Csa-Chr4:18087368 Csa03g00208 Csa-Chr3:1635213 2.64E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01843 Csa_Chr04 FPKM 1.467112 1.584504 2.458688 2.593916 3.411478 4.40459 3.610629 39.924446 42.912903 44.344318