Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01845 ATGTCTTTAAATTTAGAGGTACCTCCTTCAAATGGTTGTGAGAAAGTTATATTATCTGAAGAACAGCATATGAAGATTTGTGAGGTGCGAAGGCTTTTAGGACCCTTGTCGGGTACGTCATCAATTTACTGTTCGGATCTATCCATTTTGAGATATCTAAGAGCAAGAAACTGGAATGTGAAGAAGGCAACTAAAATGCTGAAAGCAACTTTGAAGTGGAGGTCAGAATACAAACCCGAAGAGATTCAATGGGATGAGGTTGCTCATGAAGCTGAAACTGGGAAAGTTTATTGTGCGGACTGTAAGGACCGACATGGAAGAACAGTGATAGTCATGAGACCTTGTCGCCAGAACTCGAAGACTGTAAAAGGACAGATTAGATACTTGGTGTATTGCATGGAGAATGCTATTTTGAATCTTCCATCAAACCAGGAGAGTATGATCTGGCTGGTTGATTTCAAGGATTTTGACATGTCAAATATCTCATTAAAAGCAACAAAGGAGACTGCACATATTTTACAAGAACATTATCCCGAACGCCTCGGATTGGCAATTCTGTATAACGCGCCCAAGTTTTTTGAACCCTTCTGGATGGTTGCAAAGCCTTTCCTGGAGACAAAAACTGCCAACAAAGTGAAATTTGTTTACTCTGACGACGTAAACTCAAAGAGGATAATAGAGGATCTGTTCGATATGGACCAGCTGGAGTCTGCGTTTGGTGGAAACAATAATGTTGGTTTCAATATAACCAAATATGCTGAGATGATGAAAGAAGACGATAAACAGATGCGTTGTTCCTGGTCCGCGGTAAATCCTAATAGCCTAGCCTCGGAAAAAGCTCAGAGTAGCGGTCTAGTCGGTTCTCAAATCACTAACCGTTCTGAATCCTCAGAGAATGAGAGGACAGATGGTGATATTCATATAACTAGAAAAGCAGATGGCAACTGA 948 40.82 MSLNLEVPPSNGCEKVILSEEQHMKICEVRRLLGPLSGTSSIYCSDLSILRYLRARNWNVKKATKMLKATLKWRSEYKPEEIQWDEVAHEAETGKVYCADCKDRHGRTVIVMRPCRQNSKTVKGQIRYLVYCMENAILNLPSNQESMIWLVDFKDFDMSNISLKATKETAHILQEHYPERLGLAILYNAPKFFEPFWMVAKPFLETKTANKVKFVYSDDVNSKRIIEDLFDMDQLESAFGGNNNVGFNITKYAEMMKEDDKQMRCSWSAVNPNSLASEKAQSSGLVGSQITNRSESSENERTDGDIHITRKADGN* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18109934 18113467 + CsaV3_4G028710.1 Csa04g01845 527455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01845 315 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Csa04g01845 315 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Csa04g01845 315 PANTHER GH16843P 1 298 - -
Csa04g01845 315 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Csa04g01845 315 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Csa04g01845 315 CDD SEC14 103 242 IPR001251 -
Csa04g01845 315 MobiDBLite consensus disorder prediction 276 295 - -
Csa04g01845 315 MobiDBLite consensus disorder prediction 296 315 - -
Csa04g01845 315 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 298 - -
Csa04g01845 315 Pfam CRAL/TRIO domain 94 241 IPR001251 -
Csa04g01845 315 MobiDBLite consensus disorder prediction 276 315 - -
Csa04g01845 315 Gene3D - 10 283 IPR036865 -
Csa04g01845 315 SMART sec14_4 90 244 IPR001251 -
Csa04g01845 315 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01845 - - - csv:101206891 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00134 Csa-Chr1:800033 Csa04g01845 Csa-Chr4:18109934 9.93E-20 dispersed
Csa04g00504 Csa-Chr4:3290804 Csa04g01845 Csa-Chr4:18109934 3.11E-88 dispersed
Csa04g01845 Csa-Chr4:18109934 Csa04g02141 Csa-Chr4:22223929 6.63E-115 dispersed
Csa04g01845 Csa-Chr4:18109934 Csa03g04202 Csa-Chr3:36860229 4.97E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g381 . . . Bda03g00501 Bpe02g00096 Bpe04g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1579 . . . Csa04g01845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011765 1 3 0 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01845 Csa_Chr04 FPKM 15.705592 15.620495 10.159012 10.900023 7.564495 8.85318 6.660984 16.304749 16.191004 14.215534