Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01846 ATGTCTTTGGGGAAGAGGTCACGTGCTCCCATCAGAAAAACGCCGAGCATGACTGAGATCACCTTCGATCTGGGTGGTACTGGTTCCGCCGCCGAACAATTCCCCCCATCTCTCGGTTATCCAACTAACACCCAAATATCAGGATACCAACAAATGGTTTCCCCAAGAAATTTCAGAAGGCATTCAGTTGATCTACAAGAAAATGCTAATTTCCTCAGAGCTTGTTCTCTTTGCTCTCGCCCTCTTGTTCCTGGTCGAGATATTTACATGTACAGGGGAGACAGGGGATTCTGTAGCGATGAATGTAGGCAAAAGCAAATGAAGCAAGATGAGAGAATGGAGAAGTGCAGTTTAGCAACAAAGAAAGCGGCAGCAGTGGGTGTAGCGGTGGTATCTACATCGGCTGGTGTTCCACCTCAGATCTCCGGGAAGGGTGAAACCGTAGCTGCTTCATAG 456 48.03 MSLGKRSRAPIRKTPSMTEITFDLGGTGSAAEQFPPSLGYPTNTQISGYQQMVSPRNFRRHSVDLQENANFLRACSLCSRPLVPGRDIYMYRGDRGFCSDECRQKQMKQDERMEKCSLATKKAAAVGVAVVSTSAGVPPQISGKGETVAAS* 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18115964 18117426 + CsaV3_4G028720.1 Csa04g01846 527456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01846 151 ProSiteProfiles Zinc finger FLZ-type profile. 70 114 IPR007650 -
Csa04g01846 151 Pfam zinc-finger of the FCS-type, C2-C2 66 112 IPR007650 -
Csa04g01846 151 PANTHER FCS-LIKE ZINC FINGER 5 1 122 - -
Csa04g01846 151 PANTHER PROTEIN INCREASED RESISTANCE TO MYZUS PERSICAE 1 1 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01846 - - - csv:101206644 286.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01482 Csa-Chr3:11000943 Csa04g01846 Csa-Chr4:18115964 5.58E-14 dispersed
Csa04g00480 Csa-Chr4:3070944 Csa04g01846 Csa-Chr4:18115964 1.36E-21 dispersed
Csa04g01846 Csa-Chr4:18115964 Csa05g01540 Csa-Chr5:17992850 1.69E-36 dispersed
Csa07g01153 Csa-Chr7:11354692 Csa04g01846 Csa-Chr4:18115964 2.92E-11 dispersed
Csa07g01707 Csa-Chr7:17561150 Csa04g01846 Csa-Chr4:18115964 3.89E-10 dispersed
Csa04g01846 Csa-Chr4:18115964 Csa06g03176 Csa-Chr6:27027667 5.01E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g376 . Blo12g00696 . Bda03g00503 Bpe02g00093 Bpe04g00458 . Bma01g02624 . . . Cma09g00649 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001468 2 2 3 4 3 1 4 2 2 2 2 2 4 2 1 4 2 1 4 2 2 2 2 2 2 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g01846 Csa_Chr04 FPKM 19.951477 23.854307 21.619143 24.285715 101.762215 106.317215 110.797913 10.198867 11.506801 10.790376