Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01847 ATGAGTGACGAGAGAGAGAATTCAGTTGATGAAAAACTTGAAACAAAGGAGATGGATAACAGAAGTTTGATTCCAGATGATCAAGCACAGGATGAGCGATACATTCACAAAGTTGGAGTTCCTCCAAAGCAAAAACTCTACAAAGAAATCAAGTCTGCAGTGAAAGAAACGTTTTTCCCAGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAAGCGGAAATTTATACTCGGCATCCAAGCGGTTTTCCCGATACTTGATTGGGGAAGAAATTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATCCCACAGGATATTGGGTATGCCAAGCTTGCAAATTTGTCTCCAGAGTATGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTACGCAATTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACACTGCTTCAAGAGGAAATCGATTCTGCTACAAATCCAAAAGACTACCTTCGGCTAGCATTTACAGCTACATTTTTTGCAGGGATCACACAAGCCACCCTTGGAATTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGAGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATAAAGAAGTTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTCCGTATTTGGCTCAATGAGACACGGATGGAACTGGCAAACAATAGTGATTGCTACAACCTTCCTTGGATTCCTTCTATTTGCAAAATACATGGGAAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTTTCTACCTTTCTCGTCTTCATAACTCATGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTAAAAGACTTATTTTTATCAGGCCAATACCTTCTAAAAGGGTTTAAGATTGGTGTCGTGGCAGGAATGGTGGCACTGACGGAAGCCGTTGCGATTGGAAGAACATTTGCTTCAATGAAAGACTATCAAATAGATGGAAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGTCTTCCTGCTATGTAGCAACAGGATCATTCTCTCGATCGGCTGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCCATTGTAGTACTACTAACCTTGGCATTCCTCACCCCACTTTTCAAATATACTCCTAACGCGATTCTGTCTGCTATCATCATATCCGCTGTGATCAACCTGATCGACTTGTATGCAGTGAAACTGATTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCTTCGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTGTTGCGGTATGCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTCGGAAAGATCCCGAGGACGACTGTTTACCGAAACATACTACAATATCCTGAAGCAACCAAGGTTCCTGGCCTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAAGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACCAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTGAAGAAACGAGAAATTCAGCTCATTCTAGCAAATCCAGGGCCCGTGGTGATGGACAAACTACACGCGTCGGAGTTTGTAGATTTGATAGGCCAAGACAATATCTTTCTCACAGTTGCAGATGCGGTCTCATCTTGTAATCCAAAGATAATGAACGACGTTTGA 1986 41.39 MSDERENSVDEKLETKEMDNRSLIPDDQAQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKKRKFILGIQAVFPILDWGRNYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLSPEYGLYSSFVPPLIYAIMGSSRDIAIGPVAVVSLLLGTLLQEEIDSATNPKDYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGSMRHGWNWQTIVIATTFLGFLLFAKYMGKKNKRLFWVPAIAPLISVVLSTFLVFITHADKEGVAIVKHIEKGINPPSVKDLFLSGQYLLKGFKIGVVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGVMNVVGSMSSCYVATGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLIDLYAVKLIWKIDKFDFVACMGAFFGVIFFSVEIGLLVAVCISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATKVPGLLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVMDKLHASEFVDLIGQDNIFLTVADAVSSCNPKIMNDV* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18135773 18145219 - CsaV3_4G028730.1 Csa04g01847 527457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01847 661 PANTHER SULFATE TRANSPORTER 1.3 27 660 - -
Csa04g01847 661 Coils Coil 566 586 - -
Csa04g01847 661 PANTHER SULFATE TRANSPORTER 27 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa04g01847 661 MobiDBLite consensus disorder prediction 1 26 - -
Csa04g01847 661 Pfam STAS domain 531 649 IPR002645 -
Csa04g01847 661 TIGRFAM sulP: sulfate permease 85 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa04g01847 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Csa04g01847 661 Pfam Sulfate permease family 98 478 IPR011547 GO:0016021
Csa04g01847 661 Gene3D STAS domain 510 656 IPR036513 -
Csa04g01847 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Csa04g01847 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Csa04g01847 661 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01296 Csa-Chr3:9914975 Csa04g01847 Csa-Chr4:18135773 0 dispersed
Csa04g01847 Csa-Chr4:18135773 Csa05g01545 Csa-Chr5:18066483 0 dispersed
Csa05g01805 Csa-Chr5:21344738 Csa04g01847 Csa-Chr4:18135773 1.78E-133 dispersed
Csa04g01847 Csa-Chr4:18135773 Csa07g01694 Csa-Chr7:17436452 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01847 K17470 - csv:101207370 1277.31