Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g01851 ATGGAGTTGAGACTCGATGGTAACAAATTCAAAGGCCAAGTCCCTCCACTTCAAATACATACTTTGACCAAACTTAATGTTTCCAATAACGAATTGGACGGCCCTATTCCCACTAGTTTAAGCCATATGGATCCTTCATGCTTTTCAGGCAACATTGATCTATGCGGGGATCCACTACCAGAATGCGGAAAAGCCCCAATGTCATCCTCGGGGCTACTAAAGATCGCAGTGATAGTCATAATTGTGGGGCTAACATTAGCAGTACTAGCTGCAATTTTCATCATATTGAATTTAAGAAACCAGCCAGCAGCATTACAACTAGGGAAGGAGAATGCAGGGATGATAAACATGGAAGATCAGGATCAGAACAAATACGTGAACGCTAAGCAGGTAACAGCAGGGGTAGGGGACGGATATAGATCAATAGAGTCATCATCATCGTCGGTGGCTCAGGCAACGAGGCGAGGAGGGGCCGAGCATGGAAAACTGTTGTTTGTGAGGGACGACAGGGAGAGGTTCGATTTACAAGACTTGTTAAGAGCGTCGGCGGAAATTTTGGGGAGTGGGTCATTTGGTTCGTCGTATAAAGCAACAATACTTAGTAATGCAGTGGTGGTGAAGCGTTATAAGCATATGAATAATGTGGGAAGAGAAGAGTTTCATGAGCATATGAGAAGGTTAGGGAGGTTGACGCATCCCAATTTACTTCCTTTGGTTGCTTACTATTATAGGAAGGAAGAGAAGCTGTTGATTTCAGACTTTGTGGATAATGGGAGTTTGGCCAGCCATTTGCATGGGAACCACAACCTGGAAGAGGCAGGACTAGATTGGGCAACAAGATTGAAGATCATAAGAGGCATAGCAAGGGGCCTTTCTTACCTGTACACCTCGCTCCCAAACGTATTAGCAGCACATGGACATCTCAAATCTTCAAATGTGTTGCTAGACGAGTCCATGGAGCCATTGCTGACGGACTACGGTCTAAGCCCAGTAGCCAATCTAGAGCAAGGGCAGAGTCTAATGATGGCCTACAAATCCCCTGAGTATGCTCAAATGGGTCGCATAACCAAGAAGACAGACGTCTGGAGTTTCGGAATAGTCATTCTTGAAATGTTAACTGGTAGATTCCCAGAGAACTACCTGACACGAAACCACGACCCGAAAGCCGACCTTGCGGCTTGGGTTAACAACATGATCAAGGAAAAGAAGACGCCGCTAGTGTTTGACCCCGAGCTGGGGCGAGCCAGGGAGAGTAGTAAAGGGGAGTTGCTGAAGATGCTTAAGATTGCGTTGAGTTGCTGTGAGGAAGATGTGGATAGACGATTGGATTTGAATCAAGTAGCTGCAGAGATTGAAGATTTAAATGATGAAGATTTGAGTGATGATGATGATGATGATGATGATGATGATGATGGACATAATTTCTCCCCTACTTCTCGCCATATTCATATTGCTGTTTGA 1461 45.04 MELRLDGNKFKGQVPPLQIHTLTKLNVSNNELDGPIPTSLSHMDPSCFSGNIDLCGDPLPECGKAPMSSSGLLKIAVIVIIVGLTLAVLAAIFIILNLRNQPAALQLGKENAGMINMEDQDQNKYVNAKQVTAGVGDGYRSIESSSSSVAQATRRGGAEHGKLLFVRDDRERFDLQDLLRASAEILGSGSFGSSYKATILSNAVVVKRYKHMNNVGREEFHEHMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEAGLDWATRLKIIRGIARGLSYLYTSLPNVLAAHGHLKSSNVLLDESMEPLLTDYGLSPVANLEQGQSLMMAYKSPEYAQMGRITKKTDVWSFGIVILEMLTGRFPENYLTRNHDPKADLAAWVNNMIKEKKTPLVFDPELGRARESSKGELLKMLKIALSCCEEDVDRRLDLNQVAAEIEDLNDEDLSDDDDDDDDDDDGHNFSPTSRHIHIAV* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18200725 18204181 - CsaV3_4G028770.1 Csa04g01851 527461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g01851 486 ProSiteProfiles Protein kinase domain profile. 180 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g01851 486 Gene3D Ribonuclease Inhibitor 1 68 IPR032675 -
Csa04g01851 486 Gene3D Phosphorylase Kinase; domain 1 144 254 - -
Csa04g01851 486 Gene3D Transferase(Phosphotransferase) domain 1 255 476 - -
Csa04g01851 486 MobiDBLite consensus disorder prediction 453 486 - -
Csa04g01851 486 Pfam Protein tyrosine and serine/threonine kinase 184 449 IPR001245 GO:0004672|GO:0006468
Csa04g01851 486 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 463 - -
Csa04g01851 486 SUPERFAMILY Protein kinase-like (PK-like) 184 452 IPR011009 -
Csa04g01851 486 MobiDBLite consensus disorder prediction 453 472 - -
Csa04g01851 486 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 1 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02307 Csa-Chr2:20577187 Csa04g01851 Csa-Chr4:18200725 2.02E-119 dispersed
Csa03g04418 Csa-Chr3:38547001 Csa04g01851 Csa-Chr4:18200725 9.44E-116 dispersed
Csa04g01851 Csa-Chr4:18200725 Csa03g02101 Csa-Chr3:17491006 4.20E-80 dispersed
Csa04g01851 Csa-Chr4:18200725 Csa01g00459 Csa-Chr1:2909428 1.73E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78171 PF07714 PK_Tyr_Ser-Thr 3.30E-30 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g01851 - - csv:101203276 917.531